Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0469
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    85   4e-17
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    47   7e-06
Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical...    29   2.8  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 84.6 bits (200), Expect = 4e-17
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           K+  C YSGYKI+PGHGK +V+ DGK   FL+ K      +RRNPR + WTVLYR K KK
Sbjct: 2   KVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNPRDIRWTVLYRIKNKK 61

Query: 219 GQ--EEEQAKKRTR 254
           G   +E+  +K+T+
Sbjct: 62  GTHGQEQVTRKKTK 75



 Score = 30.7 bits (66), Expect = 0.69
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 212 QKGPRGR---TSKETY*RTQKFQRAIVGASLSDIMAKRNMKPEVR 337
           +KG  G+   T K+T    Q   RA+ G SL  I+AKRN   + R
Sbjct: 60  KKGTHGQEQVTRKKTKKSVQVVNRAVAGLSLDAILAKRNQTEDFR 104


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 21/56 (37%), Positives = 29/56 (51%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR 206
           +I  C +    IYPGHG   V+ D   F F  S+C      ++NPRK+ +T   RR
Sbjct: 2   RIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNPRKLRFTKAARR 57


>Z81561-3|CAB04553.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 268 ELLGPLVRFFACSSSWPFLNLRLYRTVHVTLRGFLLIKWAASHFEFRNVK 119
           +LLGP+   F     W  ++   +R +   +R +L  KW   +F F +++
Sbjct: 10  DLLGPVPTMFL----WVIVSFAFFRALQFIVRWYLFGKWTWPNFNFFDIR 55


>AL032652-11|CAA21712.2|  350|Caenorhabditis elegans Hypothetical
           protein Y63D3A.8 protein.
          Length = 350

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -1

Query: 268 ELLGPLVRFFACSSSWPFLNLRLYRTVHVTLRGFLLIKWAASHFEFRNVK 119
           +LLGP+   F     W  ++   +R +   +R +L  KW   +F F +++
Sbjct: 10  DLLGPVPTMFL----WVIVSFAFFRALQFIVRWYLFGKWTWPNFNFFDIR 55


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,856,070
Number of Sequences: 27780
Number of extensions: 155891
Number of successful extensions: 375
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)