Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0469
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    75   4e-14
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            74   5e-14
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           60   1e-09
At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636...    28   3.4  
At5g13090.1 68418.m01500 expressed protein predicted proteins - ...    28   4.5  
At4g01900.1 68417.m00250 P II nitrogen sensing protein (GLB I) i...    27   6.0  
At1g30370.1 68414.m03713 lipase class 3 family protein similar t...    27   7.9  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 32/75 (42%), Positives = 44/75 (58%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK
Sbjct: 4   KTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKK 63

Query: 219 GQEEEQAKKRTRGPK 263
              +E  K+R R  K
Sbjct: 64  DAAQEAVKRRRRATK 78



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 266 FQRAIVGASLSDIMAKRNMKPEVR 337
           + R+IVGA+L  I  KR  KPEVR
Sbjct: 81  YSRSIVGATLEVIQKKRAEKPEVR 104


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 32/75 (42%), Positives = 44/75 (58%)
 Frame = +3

Query: 39  KIGLCAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRRKFKK 218
           K  LC +SG KIYPG G   ++ D + F FLNSKC+     +  P K+ WT +YR++ KK
Sbjct: 4   KTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKK 63

Query: 219 GQEEEQAKKRTRGPK 263
              +E  K+R R  K
Sbjct: 64  DAAQEAVKRRRRATK 78



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +2

Query: 266 FQRAIVGASLSDIMAKRNMKPEVR 337
           + R+IVGA+L  I  KR  KPEVR
Sbjct: 81  YSRSIVGATLEVIQKKRAEKPEVR 104


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 36/106 (33%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
 Frame = +3

Query: 51  CAYSGYKIYPGHGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYR----RKFKK 218
           C +    IYPGHG   V+ D K F F  SKC     M+RNPRKV WT  +R    +   K
Sbjct: 6   CWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDMTK 65

Query: 219 GQEEEQAKKRTRGPKSSNXXXXXXXXXXXXXXXI*SLKYVKRXENR 356
               E  KKR R  +                  I + +  K  ENR
Sbjct: 66  DTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENR 111


>At3g28700.1 68416.m03581 expressed protein contains Pfam PF02636:
           Uncharacterized ACR, COG1565
          Length = 471

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 163 GGILVK*HGLSCTGASSKRAKRKNKQRNVLEDP 261
           GG L+  +G++   + S +A RK+K  N+L+DP
Sbjct: 330 GGALIIDYGMNAIISDSLQAIRKHKFVNILDDP 362


>At5g13090.1 68418.m01500 expressed protein predicted proteins -
           Arabidopsis thaliana
          Length = 269

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 190 LSCTGASSKRAKRKNKQRNVLEDPKVPTCDCWCF 291
           +S  G SS + K K K     ++ K P  DC CF
Sbjct: 72  ISDRGNSSSKNKTKKKSNKSSKNHKPPVFDCECF 105


>At4g01900.1 68417.m00250 P II nitrogen sensing protein (GLB I)
           identical to P II nitrogen sensing protein GLB I
           (GI:7268574) [Arabidopsis thaliana]; similar to nitrogen
           regulatory protein P-II (PII signal transducing protein)
           (SP:O30794) {Nostoc punctiforme}
          Length = 196

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +1

Query: 22  VLSGQIRSDFAPIVDTKY--IQAMARPW 99
           V+S QI SD+ P  D+K+  ++A+ RPW
Sbjct: 59  VVSAQISSDYIP--DSKFYKVEAIVRPW 84


>At1g30370.1 68414.m03713 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile: PF01764: Lipase
          Length = 529

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 84  HGKTMVKVDGKTFTFLNSKCEAAHLMRRNPRKVTWTVLYRR-KFKKGQEEE 233
           HGKT+VKV     +  NSK E     + +  + T   + R   F K + EE
Sbjct: 269 HGKTVVKVQSGFLSIYNSKSELTRYNKESASEQTMDEVKRLVNFFKDRGEE 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,480,740
Number of Sequences: 28952
Number of extensions: 150227
Number of successful extensions: 376
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)