Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0465
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   136   2e-33

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  136 bits (330), Expect = 2e-33
 Identities = 59/82 (71%), Positives = 74/82 (90%)
 Frame = +2

Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
           +D+FL   LNDEV+K++PV KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRG
Sbjct: 68  VDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRG 126

Query: 437 AIILAKLSVLPVRRGYWGNKIG 502
           AII+ KLS++P+RRGYWG  +G
Sbjct: 127 AIIMGKLSIMPIRRGYWGTALG 148



 Score = 91.1 bits (216), Expect = 2e-19
 Identities = 38/55 (69%), Positives = 48/55 (87%)
 Frame = +1

Query: 508 NTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
           +TVP KV+GKCGSVTVRL+PAPRG G+V+AP  K+ LQ+AG++DCYT +RGST T
Sbjct: 151 HTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKT 205



 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +3

Query: 138 KEDXKXWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
           +++ K WVPVTKLGRLV+ GKI  +  IYL+SLPIKE+
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEY 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,820
Number of Sequences: 5004
Number of extensions: 48877
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)