Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0465
(744 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 143 2e-34
07_01_0756 + 5819367-5820038,5820847-5821005 140 1e-33
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 70 2e-12
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 2e-05
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 28 6.8
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 6.8
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528... 28 9.0
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 143 bits (346), Expect = 2e-34
Identities = 65/75 (86%), Positives = 71/75 (94%)
Frame = +2
Query: 281 LNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 460
L DEV+KI PV KQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIILAKLS
Sbjct: 85 LKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIILAKLS 144
Query: 461 VLPVRRGYWGNKIGK 505
V+PVRRGYWGNKIG+
Sbjct: 145 VVPVRRGYWGNKIGQ 159
Score = 93.5 bits (222), Expect = 2e-19
Identities = 40/55 (72%), Positives = 50/55 (90%)
Frame = +1
Query: 508 NTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
+TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG++D +TS+RGST T
Sbjct: 161 HTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIEDVFTSSRGSTKT 215
Score = 55.2 bits (127), Expect = 5e-08
Identities = 22/37 (59%), Positives = 30/37 (81%)
Frame = +3
Query: 138 KEDXKXWVPVTKLGRLVREGKIDKLXSIYLFSLPIKE 248
+++ + WVPVTKLGRLV+EG+ K+ IYL SLP+KE
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKE 74
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 140 bits (339), Expect = 1e-33
Identities = 64/75 (85%), Positives = 70/75 (93%)
Frame = +2
Query: 281 LNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLS 460
L DEV+KI PV KQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIILAKLS
Sbjct: 88 LKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIILAKLS 147
Query: 461 VLPVRRGYWGNKIGK 505
V+PVRRGYWGNKIGK
Sbjct: 148 VVPVRRGYWGNKIGK 162
Score = 95.1 bits (226), Expect = 5e-20
Identities = 41/57 (71%), Positives = 51/57 (89%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG++D +TS+RGST T
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAAHVPKKVLQFAGIEDVFTSSRGSTKT 218
Score = 55.2 bits (127), Expect = 5e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +3
Query: 138 KEDXKXWVPVTKLGRLVREGKIDKLXSIYLFSLPIKE 248
+++ + WVPVTKLGRLV+E KI K+ IYL SLP+KE
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKE 77
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 69.7 bits (163), Expect = 2e-12
Identities = 32/64 (50%), Positives = 45/64 (70%)
Frame = +1
Query: 499 RKANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGTWE 678
RK +TV CKV K GSVTVR++ P G+ +V+ PKK+L+ AG++D +TS+RGST T
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMMLPPMGSSVVATRVPKKVLKFAGIEDVFTSSRGSTKTLS 105
Query: 679 ILLK 690
+K
Sbjct: 106 NFVK 109
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 356 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 451
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 284 NDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 463
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 464 LPV 472
+ V
Sbjct: 231 VTV 233
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 418 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFXYRHD 302
+F+A LHT +M V +E C LS F +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>04_03_1049 + 22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 93 DRHGLYLHRVIRIRRENRHVHRLEQRPP 10
D HGL+ + + RH+HR+E +PP
Sbjct: 1006 DMHGLHASEAVEVLE--RHLHRIEFQPP 1031
>02_01_0707 -
5276963-5278396,5280163-5280248,5280634-5281011,
5281453-5281690,5281787-5282052,5282148-5282526
Length = 926
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 565 PAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGTWEILLKP 693
P RG G ++AP + Q AGV T R T T + ++P
Sbjct: 51 PGRRGAGRLAAPRCSTIEQAAGVSSAVTVDRTLTVTATVTVQP 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,366,037
Number of Sequences: 37544
Number of extensions: 372398
Number of successful extensions: 927
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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