Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0465
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...   136   2e-32
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    31   1.1  
U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homolog...    30   2.0  
AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin pro...    30   2.0  
Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z81584-8|CAE17906.1|   77|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score =  136 bits (328), Expect = 2e-32
 Identities = 63/75 (84%), Positives = 69/75 (92%)
 Frame = +2

Query: 278 SLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKL 457
           +L DEVLKI PV KQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVATAIRGAI+ AKL
Sbjct: 97  NLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKL 156

Query: 458 SVLPVRRGYWGNKIG 502
           +V+PVRRGYWGNKIG
Sbjct: 157 AVVPVRRGYWGNKIG 171



 Score =  102 bits (245), Expect = 2e-22
 Identities = 45/55 (81%), Positives = 50/55 (90%)
 Frame = +1

Query: 508 NTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
           +TVPCKVTGKC SV VRLIPAPRGTGIVSAP PKKLL MAG++DCYT+A+GST T
Sbjct: 174 HTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTAT 228



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 25/37 (67%), Positives = 26/37 (70%)
 Frame = +3

Query: 141 EDXKXWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
           E    W PVTKLGRLV+E KI  L  IYL SLPIKEF
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEF 88


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 535 KCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGST 666
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +1

Query: 535 KCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGST 666
           +C +  V     PRG G+   P   K+ +  G++D Y    GST
Sbjct: 215 ECRNTRVFAQRRPRGFGLTCHPRLIKICEAIGIKDIYVKVEGST 258


>U88314-13|ABR92611.1| 1346|Caenorhabditis elegans Formin homology
           domain protein 1 protein.
          Length = 1346

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 562 IPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGTWEILLKPHTLPLPRHMPT 726
           IP P   GI+  P P   L M G+     S   + G  ++  KP T+  P  +P+
Sbjct: 789 IPPPPPLGIIPPPPPPGNLLMNGINRGDISPAANKGVLKLHWKPATVEQPDGIPS 843


>AB084086-1|BAC67013.1| 1346|Caenorhabditis elegans Formactin
           protein.
          Length = 1346

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 562 IPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGTWEILLKPHTLPLPRHMPT 726
           IP P   GI+  P P   L M G+     S   + G  ++  KP T+  P  +P+
Sbjct: 789 IPPPPPLGIIPPPPPPGNLLMNGINRGDISPAANKGVLKLHWKPATVEQPDGIPS 843


>Z74041-9|CAA98523.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 361 NKCLETCALSGTCLFXYR-HDLKNLIIQGR 275
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z74035-5|CAA98485.2|  801|Caenorhabditis elegans Hypothetical
           protein F47G9.3 protein.
          Length = 801

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 361 NKCLETCALSGTCLFXYR-HDLKNLIIQGR 275
           ++CLE C +S  C F Y+  D+ N +I  R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315


>Z81584-8|CAE17906.1|   77|Caenorhabditis elegans Hypothetical
           protein T04C12.8 protein.
          Length = 77

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 587 IPVPRGAGISRTVTEPHLPVTLQGTVXAFLSC 492
           +P+P+GA   +++  P L   L   V AFL C
Sbjct: 32  VPMPKGASCPQSIFRPSLLFYLAPAVIAFLIC 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,498
Number of Sequences: 27780
Number of extensions: 295819
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)