Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0465
(744 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 153 9e-38
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 153 1e-37
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 152 2e-37
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 152 2e-37
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 152 2e-37
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 152 2e-37
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 5.7
At3g27180.1 68416.m03399 expressed protein 28 5.7
At5g29090.1 68418.m03619 hypothetical protein 27 9.9
At3g63100.1 68416.m07087 glycine-rich protein 27 9.9
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 153 bits (372), Expect = 9e-38
Identities = 69/83 (83%), Positives = 77/83 (92%)
Frame = +2
Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
ID +G SL DEV+KIMPV KQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAIRG
Sbjct: 79 IDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRG 138
Query: 437 AIILAKLSVLPVRRGYWGNKIGK 505
AIILAKLSV+P+RRGYWGNKIGK
Sbjct: 139 AIILAKLSVVPIRRGYWGNKIGK 161
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG+ D +TS+RGST T
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 217
Score = 57.2 bits (132), Expect = 1e-08
Identities = 24/36 (66%), Positives = 30/36 (83%)
Frame = +3
Query: 144 DXKXWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
+ + WVPVTKLGRLV+EGKI K+ IYL SLP+KE+
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEY 76
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 153 bits (371), Expect = 1e-37
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +2
Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
ID +G +L DEV+KIMPV KQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 88 IDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 147
Query: 437 AIILAKLSVLPVRRGYWGNKIGK 505
AIILAKLSV+PVRRGYWGNKIGK
Sbjct: 148 AIILAKLSVVPVRRGYWGNKIGK 170
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG+ D +TS+RGST T
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 226
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +3
Query: 144 DXKXWVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
+ + WVPVTKLGRLV G I ++ IYL SLP+KE+
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEY 85
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 152 bits (369), Expect = 2e-37
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +2
Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
ID +G +L DEV+KIMPV KQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 437 AIILAKLSVLPVRRGYWGNKIGK 505
AIILAKLSV+PVRRGYWGNKIGK
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGK 169
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3
Query: 156 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
WVPVTKLGRLV + KI KL IYL SLP+KE+
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEY 84
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 152 bits (369), Expect = 2e-37
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +2
Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
ID +G +L DEV+KIMPV KQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 437 AIILAKLSVLPVRRGYWGNKIGK 505
AIILAKLSV+PVRRGYWGNKIGK
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGK 169
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3
Query: 156 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
WVPVTKLGRLV + KI KL IYL SLP+KE+
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEY 84
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 152 bits (369), Expect = 2e-37
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +2
Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
ID +G +L DEV+KIMPV KQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 437 AIILAKLSVLPVRRGYWGNKIGK 505
AIILAKLSV+PVRRGYWGNKIGK
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGK 169
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3
Query: 156 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
WVPVTKLGRLV + KI KL IYL SLP+KE+
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEY 84
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 152 bits (369), Expect = 2e-37
Identities = 70/83 (84%), Positives = 76/83 (91%)
Frame = +2
Query: 257 IDFFLGXSLNDEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRG 436
ID +G +L DEV+KIMPV KQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAIRG
Sbjct: 87 IDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRG 146
Query: 437 AIILAKLSVLPVRRGYWGNKIGK 505
AIILAKLSV+PVRRGYWGNKIGK
Sbjct: 147 AIILAKLSVVPVRRGYWGNKIGK 169
Score = 94.3 bits (224), Expect = 8e-20
Identities = 41/57 (71%), Positives = 50/57 (87%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGSTGT 672
K +TVPCKVTGKCGSVTVR++PAPRG+GIV+A PKK+LQ AG+ D +TS+RGST T
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKT 225
Score = 52.8 bits (121), Expect = 2e-07
Identities = 23/32 (71%), Positives = 26/32 (81%)
Frame = +3
Query: 156 WVPVTKLGRLVREGKIDKLXSIYLFSLPIKEF 251
WVPVTKLGRLV + KI KL IYL SLP+KE+
Sbjct: 53 WVPVTKLGRLVADNKITKLEQIYLHSLPVKEY 84
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +2
Query: 287 DEVLKIMPVXKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 466
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 467 PV 472
V
Sbjct: 209 QV 210
Score = 37.5 bits (83), Expect = 0.009
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPXPKKLLQMAGVQDCYTSARGS 663
K +T P + G G+ V L PA GTG+++ + +L+MAGV++ GS
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGS 267
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 353 AFVAIGDNNGHIGLGVKCSKE 415
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g27180.1 68416.m03399 expressed protein
Length = 518
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Frame = +3
Query: 432 EALLSLLSCQFYQSEEVTGVTR*ESXHRP-LQGHRQVWFRNSXAD-----SCXSWYWYCV 593
++L L C +QS +G T+ + HRP + +F+ D SC W W C
Sbjct: 42 DSLACSLQCPHFQS--CSGCTQEFNLHRPAVVDEASDFFKRYGVDDFTFDSCRLWGWRCR 99
Query: 594 CXXS*EASSDGWCTGL 641
+ SSD GL
Sbjct: 100 AKLAVRGSSDNALIGL 115
>At5g29090.1 68418.m03619 hypothetical protein
Length = 195
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 434 GAIILAKLSVLPVRRGYWGNKIGKXTPS 517
G LAK P R G W +IGK PS
Sbjct: 127 GGASLAKAWHTPARSGGWSGRIGKLWPS 154
>At3g63100.1 68416.m07087 glycine-rich protein
Length = 199
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = -1
Query: 135 RAHDHGRDXDRVHEDRHGLYLHRVIRIRRENRHVH 31
R H HGRD R H HG + HR R R H H
Sbjct: 111 RDHRHGRD--RGHHRGHGHHHHRGHRRGRGRGHGH 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,281,080
Number of Sequences: 28952
Number of extensions: 281314
Number of successful extensions: 643
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1643603136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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