Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0463
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 32 0.52
03_06_0684 + 35531167-35532899,35533360-35533596,35533870-355340... 31 0.69
08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614 31 0.91
08_02_0885 + 22268287-22268988 31 1.2
03_05_0780 + 27646936-27647084,27647168-27647289,27649380-276494... 31 1.2
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 1.6
11_06_0610 - 25449085-25453284 29 3.7
11_02_0037 - 7613632-7613727,7614452-7615507 29 3.7
07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733 29 3.7
01_06_1431 + 37317248-37317907 29 4.8
03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676 28 6.4
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305... 28 6.4
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 6.4
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 6.4
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540... 28 6.4
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 8.5
09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238 28 8.5
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 8.5
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 28 8.5
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 31.9 bits (69), Expect = 0.52
Identities = 18/44 (40%), Positives = 21/44 (47%)
Frame = +2
Query: 134 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKRKAQALIL 265
H H +PPHL R+ + A P R LH PT R AL L
Sbjct: 20 HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLRLPAALPL 63
>03_06_0684 +
35531167-35532899,35533360-35533596,35533870-35534032,
35534112-35534174
Length = 731
Score = 31.5 bits (68), Expect = 0.69
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -1
Query: 610 CTCGQLRARRYALPNSLSEVQIFPLGSLKSS*GSCYRLRE 491
C CG L + RY L N L++V F L +L SC L E
Sbjct: 155 CKCGDLDSARYVL-NGLTQVDEFSLSALIYGYASCGHLHE 193
>08_01_1042 + 10560340-10560627,10561001-10561415,10561571-10561614
Length = 248
Score = 31.1 bits (67), Expect = 0.91
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 557 GKRVR*R--VPSGPQLSTGASARTLPSPAARCIPPPRLRTG-LRGNIA 691
G+R R R + PQ + G+ A L + R PPPRLRT L G +A
Sbjct: 156 GRRSRPRRCLAGRPQATAGSPAARLAARRLRTSPPPRLRTSRLAGAVA 203
>08_02_0885 + 22268287-22268988
Length = 233
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +1
Query: 514 LTMTSGYLMERSALRKASSVTR--TVWPAAVHRCKRPNTPITSCTMHPSPPP 663
LTMT +M KA+ + T PA RC+RP+ +C M PP
Sbjct: 31 LTMTHNCVMYLKNKEKAAGSVKGKTAIPATPRRCRRPDGSNPACKMRWERPP 82
>03_05_0780 +
27646936-27647084,27647168-27647289,27649380-27649458,
27650346-27650427,27650483-27650600,27650695-27651050,
27651404-27652222,27652846-27653265,27653426-27653437
Length = 718
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 589 PAAVHRCKRPNTPITSC-TMHPSPPPANRSSGEYR 690
P HRC P+ +C T P+PP SS E R
Sbjct: 328 PRLTHRCSTTTQPLPTCGTPAPAPPAGQPSSAEDR 362
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +3
Query: 9 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 119
++L +GDF L LL++Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 581 PSGPQLSTGASARTLPSPAARCIPPPRLR 667
PS P+ S+ + ++LP PA +PPP ++
Sbjct: 1106 PSVPKASSPPTEKSLPPPATVSLPPPTVK 1134
>11_02_0037 - 7613632-7613727,7614452-7615507
Length = 383
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +3
Query: 513 PYDDFRLPNGKICTSESEFGNAYRLARSCPQVQAPE-HSHHQLHDASLP 656
P+ + G + +G AY AR+ P P H HH H +P
Sbjct: 223 PHHHHKNGGGLLVAGGDPYGAAYAAARALPPPPPPPPHGHHHHHQIIMP 271
>07_01_0538 + 3982952-3983297,3983397-3983489,3983627-3983733
Length = 181
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 607 CKRPNTPITSCTMHPSPPPA 666
CK PI+ CT P+PPPA
Sbjct: 104 CKVQAPPISQCTAVPTPPPA 123
>01_06_1431 + 37317248-37317907
Length = 219
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = +2
Query: 575 RVPSGPQLSTGASARTLPSPAARCIPPPRLRTGLRGNIAASDPVI 709
R P P S+ +++ T SPAA PPRL + AA P I
Sbjct: 90 RSPFSPPPSSSSNSSTTASPAAAAAAPPRLIPTIPRPAAALAPHI 134
>03_01_0388 + 3018192-3018312,3018969-3019257,3019364-3019676
Length = 240
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/59 (33%), Positives = 27/59 (45%)
Frame = -1
Query: 679 PKTCSQAGGRDASCSW*WECSGACTCGQLRARRYALPNSLSEVQIFPLGSLKSS*GSCY 503
P T + GG D S + GAC G L +RY + N+ +F G +S G CY
Sbjct: 25 PGTATFYGGADGSGTM----GGACGYGNLYDQRYGINNAALSTPLFNDG---ASCGQCY 76
>02_01_0417 -
3048519-3048710,3048903-3050600,3050622-3050909,
3052308-3052377,3052417-3052668,3053235-3055297
Length = 1520
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 310 PVHFLSIR*YSALIFQNKSLGFPF*SWISSVKFLSTWSCAN 188
P F +R L+ N L P +W SS+KFL +N
Sbjct: 466 PNWFSKLRNLQILVLHNNQLNGPIPTWTSSLKFLKYVDISN 506
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 9 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 107
K+L +GDF L LL+ Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +3
Query: 123 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGKPKLLF 263
NGQH+ +D R F G RY H H+ R + L++ L+F
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIF 347
>01_01_0699 +
5405178-5405356,5405478-5405693,5405808-5405919,
5406335-5406397,5406468-5406606,5406822-5406877,
5408088-5408161,5408270-5408417,5408505-5408678,
5408809-5408896,5408996-5409109,5409728-5409825,
5409927-5410017,5410440-5410534,5410672-5410825,
5410864-5410876,5411276-5411384
Length = 640
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 13/56 (23%)
Frame = +1
Query: 547 SALRKASSVTRTVWP-AAVHRCK-----RPNTPI-------TSCTMHPSPPPANRS 675
SA AS+ + + P AA H C+ RP +P+ + +MHPSPPP S
Sbjct: 7 SAPSHASAASSSPLPFAAAHPCRASWTPRPTSPLPPLSLLRATASMHPSPPPEGHS 62
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 9 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVVN 125
++L +GDF + LL+ Y P +I+ L + ++LR V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486
>09_04_0670 + 19348468-19348949,19351594-19351724,19352433-19353238
Length = 472
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 612 APEHSHHQLHDAS-LPPACEQVFGGISP 692
A H HHQ+ A L P +Q FGG SP
Sbjct: 375 AEHHHHHQIPMAQPLVPNLQQQFGGSSP 402
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 505 NTSLTMTS-GYLMERSALRKASSVTRTVWPAAVHRCKRPNTPITSCTMHP 651
+T L MTS G ++ TVWPAA+ RP P T + P
Sbjct: 79 DTLLRMTSSGAAAVNFTFHFHNNCPETVWPAALSSAGRPPFPTTGFALPP 128
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 613 RPNTPITSCTMHPSPPPANRSSGEYRRFRP 702
RPN P+ P PPP N + + RP
Sbjct: 574 RPNRPVGMAPFMPPPPPPNNRGTKREQRRP 603
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,107,645
Number of Sequences: 37544
Number of extensions: 477872
Number of successful extensions: 2018
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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