Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0463
         (715 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26224| Best HMM Match : VWD (HMM E-Value=0)                         40   0.002
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   38   0.006
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.93 
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   31   0.93 
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)                   30   1.6  
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)                   29   3.7  
SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)                      29   4.9  
SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   28   6.5  
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)                    28   8.6  

>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
          Length = 736

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 129 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNFTLLIQLQNGK 248
           +H  TFDGRH+ F G C Y LA D +  +    + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 132 HIFTFDGRHLTFPGNCRYVL 191
           H  +FDG+  TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 63   RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDHVDRNFTLLI 230
            RPR+  P    P    A++    H+ TFD  +  FPG     C YVLA D  D  FT++ 
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687

Query: 231  Q 233
            Q
Sbjct: 1688 Q 1688


>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1530

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 90  EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HDHVDRNFT 221
           + P      +V   H  TFD R  +  G C YVL+ H H   + T
Sbjct: 843 DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTT 887


>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 132 HIFTFDGRHLTFPGNCRYVLAHD 200
           H  TFDGR  +F G C YV++ D
Sbjct: 33  HYKTFDGRLYSFQGGCNYVMSTD 55


>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
          Length = 1033

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 137  LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 232
            L VR+ PP L RKL+ R+   P+R  L    P
Sbjct: 978  LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 513 PYDDFRLPNGKICTSESEFGNAYRL 587
           P DDF + NG+   S+ EFG ++ L
Sbjct: 191 PSDDFMMKNGRYARSDREFGKSWSL 215


>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
          Length = 3083

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 607  CKRPNTPITSCTMHPSPPPANRSSGEYRRFR 699
            C++      SC  +  PPP    +GEY RF+
Sbjct: 2148 CEQGRRSKRSCIKYKDPPPTLPGNGEYERFQ 2178


>SB_56839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = +1

Query: 94  CRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETSR 222
           CR ++     T NTSS S V+T+ S  TVA   RT TS  ++R
Sbjct: 135 CRDATVYRFVTYNTSSSSNVSTTRSPVTVA---RTITSQSSNR 174


>SB_27685| Best HMM Match : CSE2 (HMM E-Value=9.5)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
 Frame = +3

Query: 168 PGNCRYVLAHDHVDRNFTLLIQLQNGKPKLLFWKIRAEYHRIER---KWTGY---SKRSF 329
           P N +  L+ +H D ++   + LQ   P    +  R      +R   K+ G+    +   
Sbjct: 15  PSNSKVALSIEHCDFSWDKHMFLQPAAPHRSTFGFRHTQDNSKRASPKYAGFVLVKRADS 74

Query: 330 QRIPDHRKGCVRFPSTKQQNRCWLIV 407
            +    R G +R P T++QN+ W I+
Sbjct: 75  NKSRKSRPGSLRQPITEKQNKSWRIL 100


>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 171 GNCRYVLAHDHVDRNFTLLIQLQNGKPKLLFWKIRAEYHRIERKW 305
           GNC Y+  +  VD N TLL  L + KP  ++  +    H I +++
Sbjct: 324 GNC-YIF-NQGVDENGTLLAHLTSSKPGPMYANVSKNGHEIRQRF 366


>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 4   SSNSCTPVISLTSWPFSEPTDLVASTH*MKCRLSSALLL*TVNTSSRST-VATSPSQETV 180
           +S S TP I+ T    +  T L+A+T  +  +  + L+  T + ++++T +AT+PS  T 
Sbjct: 691 TSTSQTPPIATTP-SLTTQTTLIATTPSLTTQ--TTLIATTPSLTTQTTLIATTPSLTTQ 747

Query: 181 ATYWRTTTSIET 216
            T   TT S+ T
Sbjct: 748 TTLIATTPSLTT 759


>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +1

Query: 580 TVWPAAVHRCKRPNTPITSCTMH-PSPPPANRSSGEYRRFR 699
           T + A  HRCK  N     CT   P P    +  G +R  R
Sbjct: 137 TAYNATCHRCKEKNHFARCCTRKLPQPQAHQQQRGAFRAIR 177


>SB_32327| Best HMM Match : ig (HMM E-Value=7.9e-23)
          Length = 932

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 463 GFYLGKLRGLLGDGNTSLTMTSGYLMERSALRKASSVTRT-VWPAAVHRCKRPNTPITSC 639
           G Y  ++  L+G   + L      + ++ A+   ++V  + V  AA   C+    P+   
Sbjct: 770 GVYHCEVSNLIGSDTSDLLFVD--VKDKPAIVSRTTVFLSKVGKAAKLTCQADGYPLPQI 827

Query: 640 TMHPSPPPANRS 675
           T +PSPP  N S
Sbjct: 828 TWNPSPPMGNTS 839


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,699,863
Number of Sequences: 59808
Number of extensions: 520520
Number of successful extensions: 1891
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1884
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)