Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0462
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   168   5e-44
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   168   5e-44

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  168 bits (408), Expect = 5e-44
 Identities = 76/91 (83%), Positives = 84/91 (92%)
 Frame = +2

Query: 2   SGGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFG 181
           SGGAAGATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 182 VSVQGIIIYRASYFGFYDTARGMLPTLRTHP 274
           VSVQGIIIYRA+YFGFYDTARGMLP  +  P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLPDPKKTP 211



 Score = 99.1 bits (236), Expect = 4e-23
 Identities = 44/52 (84%), Positives = 49/52 (94%)
 Frame = +3

Query: 354 RMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVL 509
           RMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VL
Sbjct: 239 RMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVL 290



 Score = 61.3 bits (142), Expect = 9e-12
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = +1

Query: 256 DPKNTPIVISWAIAQTVTTVAGIISYPFDTVR 351
           DPK TP +ISW IAQ VTTVAGI+SYPFDTVR
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVR 237



 Score = 29.5 bits (63), Expect = 0.034
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 396 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 485
           YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 29.1 bits (62), Expect = 0.045
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 2   SGGAAGATSLCFVYPLDFARTRLAAD-VGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRG 175
           +GG A A S   V P++  +  L    + K   + + + G+ +C  +I K  G +  +RG
Sbjct: 16  AGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRG 75

Query: 176 FGVSVQGIIIYRASYFGFYD 235
              +V      +A  F F D
Sbjct: 76  NLANVIRYFPTQALNFAFKD 95



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 41  YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 175
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  168 bits (408), Expect = 5e-44
 Identities = 76/91 (83%), Positives = 84/91 (92%)
 Frame = +2

Query: 2   SGGAAGATSLCFVYPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFG 181
           SGGAAGATSLCFVYPLDFARTRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFG
Sbjct: 121 SGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFG 180

Query: 182 VSVQGIIIYRASYFGFYDTARGMLPTLRTHP 274
           VSVQGIIIYRA+YFGFYDTARGMLP  +  P
Sbjct: 181 VSVQGIIIYRAAYFGFYDTARGMLPDPKKTP 211



 Score = 99.1 bits (236), Expect = 4e-23
 Identities = 44/52 (84%), Positives = 49/52 (94%)
 Frame = +3

Query: 354 RMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGAFSNVLRGTGGAFVL 509
           RMMMQSGRAKS+ILYK+T+HCWATI KTEG +AFFKGAFSN+LRGTGGA VL
Sbjct: 239 RMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILRGTGGALVL 290



 Score = 61.3 bits (142), Expect = 9e-12
 Identities = 26/32 (81%), Positives = 28/32 (87%)
 Frame = +1

Query: 256 DPKNTPIVISWAIAQTVTTVAGIISYPFDTVR 351
           DPK TP +ISW IAQ VTTVAGI+SYPFDTVR
Sbjct: 206 DPKKTPFLISWGIAQVVTTVAGIVSYPFDTVR 237



 Score = 29.5 bits (63), Expect = 0.034
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 396 YKNTIHCWATIAKTEGTSAFFKGAFSNVLR 485
           YK  I C+  I K +G  ++++G  +NV+R
Sbjct: 53  YKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82



 Score = 29.1 bits (62), Expect = 0.045
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +2

Query: 2   SGGAAGATSLCFVYPLDFARTRLAAD-VGKGDGQRE-FSGLGNCISKIFKSDGLIGLYRG 175
           +GG A A S   V P++  +  L    + K   + + + G+ +C  +I K  G +  +RG
Sbjct: 16  AGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRG 75

Query: 176 FGVSVQGIIIYRASYFGFYD 235
              +V      +A  F F D
Sbjct: 76  NLANVIRYFPTQALNFAFKD 95



 Score = 27.5 bits (58), Expect = 0.14
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 41  YPLDFARTRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRG 175
           YP D  R R+    G+   +  +    +C + I+K++G    ++G
Sbjct: 231 YPFDTVRRRMMMQSGRAKSEILYKSTLHCWATIYKTEGGNAFFKG 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,893
Number of Sequences: 438
Number of extensions: 3779
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)