Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0461
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    29   0.63 
SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase ...    28   1.5  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    27   2.5  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    27   3.4  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   5.9  

>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 306 LFVPIYLLVTLRGYASFTASALSSAWNKQNHVLS 407
           L  P++    +R YA  TA  L  +W++ N +LS
Sbjct: 292 LKAPVFSEAPIREYAGHTADILDLSWSRNNFLLS 325


>SPCC320.12 ||SPCC330.17c|mitochondrial inner membrane peptidase
           Atp23|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 185

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +2

Query: 245 ELTRPFGEHRINYDWRY*NKTFCSYLFAGNLEGLC 349
           E+   F +HR   DW       CS + A ++ G C
Sbjct: 87  EMIHMFDDHRFEVDWNNLRHQACSEIRASSMSGEC 121


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
            Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = +1

Query: 460  EYSVYLTNNIEYSTVYDVSIIMYGARYCCAMSYMLLYYGVV*KQXYNHII 609
            E +VY   N EY TV D S I        A  YML Y     ++ Y HII
Sbjct: 1085 ENNVYRKYNDEYVTVVDESEIFADTTGNNANPYMLTYI----RKEYRHII 1130


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 513 VHNNVWSAILLCYELYAIILWRSLKAG 593
           VH  +++  L+C  +Y  +LW +  AG
Sbjct: 363 VHTVIYTITLICITIYFSLLWMNATAG 389


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 384 NKQNHVLSCFQTTLY 428
           N QNHVLSC++T  +
Sbjct: 590 NIQNHVLSCYKTLFF 604


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,447
Number of Sequences: 5004
Number of extensions: 50235
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)