Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0461
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.8  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   6.3  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   8.3  

>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 383 PG*AQCARREASITPQGYQQIDRNKKFCFN 294
           PG   C RR    T   +Q ++  K+F +N
Sbjct: 1   PGPNGCPRRRGRQTYTRFQTLELEKEFHYN 30


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 280 VNSVFAKRSS*FGVDTEKCXITVLTISSIFIYLFIA*MGGR 158
           V S+F + S    + TE+   T+L +   FI L    +GG+
Sbjct: 15  VGSIFEEPSVMLKIWTEEFLSTILRLDPKFIALHCQEVGGK 55


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +1

Query: 472 YLTNNIEYSTVYDVSIIMYGARYCCAMSYMLLYYGVV*KQXYNH 603
           YLT+  E   ++  +I  +   YC  M  ++ YY  +     NH
Sbjct: 201 YLTDTNEIR-IFVATIFTFS--YCIPMILIIYYYSQIVSHVVNH 241


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 466 SVYLTNNIEYSTVYDVSIIMYGARYCCAMSYMLLYYGVV 582
           S Y  NNIEY  + D+      A+        +L++G+V
Sbjct: 287 SQYEENNIEYEGIQDIFNTQSSAKVMSKNG--VLFFGLV 323


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,582
Number of Sequences: 438
Number of extensions: 3412
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)