Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0458
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    28   1.3  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    28   1.7  
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    27   3.9  
SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    27   3.9  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    26   6.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.0  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   9.0  

>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
 Frame = +3

Query: 498 TTSWCLSGLLSNNGGIKRRNEVQRIARLMSKYSKKLVSKC----IYIPILKCTETELLDL 665
           TT   +   L   G  +    VQ I  L  K  KKL S       + PILK     LLD 
Sbjct: 283 TTQLSIDPNLKFKGSDRGIVPVQMIFCLKEKNQKKLNSHLWFFQAFCPILKPEVCILLDA 342

Query: 666 FLRYXGWLLIHLWLTESLVSQKLASCERI 752
             R     + HLW +  L  Q   +C  I
Sbjct: 343 GTRPGDQSIYHLWKSFDLNPQVAGACGEI 371


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/55 (27%), Positives = 33/55 (60%)
 Frame = +3

Query: 588 KYSKKLVSKCIYIPILKCTETELLDLFLRYXGWLLIHLWLTESLVSQKLASCERI 752
           +YS++L+SK  Y+P L+   +E+ ++ L+    L ++  + + +V+ K A C  +
Sbjct: 137 QYSQELLSKKQYLPTLRIC-SEISEVHLKRLDGLGMYSTIQQYIVTTKEAICSAV 190


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -1

Query: 515 KAPRSCFGSMLDISSNFTVDNFKLI*LREQQSK 417
           +AP+ C   ++++ SN T D+ KL+ L   +SK
Sbjct: 209 QAPKECAAILVNLMSNITQDDQKLVFLDLLKSK 241


>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 6   LSFFXYSLRCVRICARXSTRAK*NWLP 86
           ++FF +  R V +  R ++R+  NWLP
Sbjct: 175 IAFFPFGTRTVSLGTRMASRSLSNWLP 201


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 444 NLTPRTAIKIHVPRPKFFHSNMASCV*XSTLTNETLISYLYSSELETQ 301
           NL   TAI   +   +   SNMAS +  S  + E + SY  + + ETQ
Sbjct: 530 NLGNLTAISETLENGQTLKSNMASSIEKSKTSTEVVASYDTTLDEETQ 577


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 528 SNNGGIKRRNEVQRIARLMSKYSKKLVSK 614
           +N+ G+  RN    + +LMS Y    VSK
Sbjct: 259 ANSLGVSNRNSENEVRQLMSAYQDPSVSK 287


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = -1

Query: 428 QQSKFMCHALNFSILIWRL-VYXTVLS--QTKH*FLIYTVQN*RLSPRNYYFNKIITYIT 258
           +Q+++ C+ +N+ I   RL V   +L   + +H F  +TV +   SP NY F + +T  T
Sbjct: 257 KQAEYYCY-MNYRIKEDRLKVLQQLLKKYEGRHNFHNFTVTDDSTSPSNYRFIESVTCGT 315

Query: 257 -FIHINLQSFKLT 222
            F++ N +   +T
Sbjct: 316 PFVYENWEWIPVT 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,836,269
Number of Sequences: 5004
Number of extensions: 54373
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)