Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0458
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)                  36   0.027
SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  

>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
          Length = 445

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 24/53 (45%), Positives = 32/53 (60%)
 Frame = +3

Query: 495 KTTSWCLSGLLSNNGGIKRRNEVQRIARLMSKYSKKLVSKCIYIPILKCTETE 653
           KT    L  LL   G IK + +V RI  LM + ++KL+S+C+YI ILK T  E
Sbjct: 45  KTLLNALKPLLGFAGDIKSQ-DVMRIISLM-RDAEKLMSRCVYINILKATIVE 95


>SB_18599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/82 (25%), Positives = 41/82 (50%)
 Frame = +3

Query: 519 GLLSNNGGIKRRNEVQRIARLMSKYSKKLVSKCIYIPILKCTETELLDLFLRYXGWLLIH 698
           G+L + G + +   ++    ++ +  K+L+ K +    L+C+E EL DL  +    L + 
Sbjct: 293 GILLDQGKLNKFESLELCKPVLQQGKKQLLEKWLKEEKLECSE-ELGDLVKQVDPTLALS 351

Query: 699 LWLTESLVSQKLASCERITGSF 764
           ++L  + V  K+  C   TG F
Sbjct: 352 VYLRAN-VPAKVIQCFAETGQF 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,391
Number of Sequences: 59808
Number of extensions: 368707
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)