Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0458
         (764 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               25   0.77 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.77 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   5.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.5  

>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +3

Query: 519 GLLSNNGGIKRRNEVQRIARLMSKYSKKLVSKC 617
           G+L  N  +  +  ++ + R M   +KKL +KC
Sbjct: 67  GILDKNAEVDVQKALRHLPRSMQDSTKKLFNKC 99


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 300 STKLLFQQNHYIYYIHPHKFT 238
           S +LLF  N+YI  + P+ FT
Sbjct: 618 SVELLFINNNYINLVRPNTFT 638


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 462 CKIRRNVQHRTKTTS 506
           CKI R V H T ++S
Sbjct: 405 CKINRKVHHTTSSSS 419


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +1

Query: 157 NYQ*IPHSDT*NNHSNYAIIKNVNLKDCKFMWMNVIYV 270
           NY+   +++  NN++NY    N    + K ++ N+ Y+
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 618 IYIPILKCTETELLDLFLRYXGWLLIHLWLTESLVS 725
           I +P     E + + L L   GW +I L +  +LVS
Sbjct: 377 ILVPFFYVQEDDDVKLVLLNFGWQMICLIVVIALVS 412


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,334
Number of Sequences: 438
Number of extensions: 3924
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)