Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0458
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5...    28   5.9  
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5...    28   5.9  
At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00...    28   5.9  
At5g06250.1 68418.m00698 DNA-binding protein, putative similar t...    28   7.8  

>At3g62310.1 68416.m07000 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 726

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 477 NVQHRTKTTS----WCLSGLLSNNGGIKRRNEVQRIARLMSKYSKKLVS 611
           NV H  K  +    WC    ++N       N  Q++ R+MS+++ K+ S
Sbjct: 556 NVYHAFKQNNEDPNWCYENFINNRAMKSADNVRQQLVRIMSRFNLKMCS 604


>At2g47250.1 68415.m05900 RNA helicase, putative similar to
           SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
           (Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
           profiles PF04408: Helicase associated domain (HA2),
           PF00271: Helicase conserved C-terminal domain
          Length = 729

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +3

Query: 477 NVQHRTKTTS----WCLSGLLSNNGGIKRRNEVQRIARLMSKYSKKLVS 611
           NV H  K  +    WC    ++N       N  Q++ R+MS+++ K+ S
Sbjct: 560 NVYHAYKQNNEDPNWCFENFVNNRAMKSADNVRQQLVRIMSRFNLKMCS 608


>At1g62270.1 68414.m07025 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 383

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 633 LKCTETELLDLFLRYXGWLLIHLWLTESLVSQK 731
           L C   E L LF +  G L + +W+T ++   K
Sbjct: 268 LSCVREERLSLFFQDDGTLKMEIWMTNNITETK 300


>At5g06250.1 68418.m00698 DNA-binding protein, putative similar to
           DNA-binding proteins from [Arabidopsis thaliana] RAV1
           GI:3868857 and RAV2 GI:3868859, AP2 domain containing
           protein RAP2.8 [Arabidopsis thaliana] GI:2281641;
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 282

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -3

Query: 285 FQQNHYIYYIHPHKFTIL 232
           + QN Y YY HPH   IL
Sbjct: 262 YGQNMYYYYSHPHNMVIL 279


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,192,399
Number of Sequences: 28952
Number of extensions: 262876
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)