Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0455
(499 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022) 45 4e-05
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2) 40 9e-04
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.92
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0) 29 2.1
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12) 27 6.5
SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18) 27 6.5
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5) 27 8.6
SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7) 27 8.6
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4) 27 8.6
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016) 27 8.6
SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_26625| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
Length = 90
Score = 44.8 bits (101), Expect = 4e-05
Identities = 23/69 (33%), Positives = 39/69 (56%)
Frame = +2
Query: 200 P*QEGIHSSVQESKGYQKAAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 379
P +G+ + +++K K K + + +RR+L ++ + N+YR DL +RRA
Sbjct: 8 PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 67
Query: 380 SAILRSQRP 406
AILRSQ+P
Sbjct: 68 CAILRSQKP 76
>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
Length = 132
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +2
Query: 26 RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP 202
R NV D +P+ C PCE + Y+ +Q+G EQ PP+L+ ++E C+C +P
Sbjct: 55 RVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILRSWTPHTEEGCFCEAKP 108
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 30.3 bits (65), Expect = 0.92
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = -1
Query: 265 VFSGFLVAFA-FLYTTVNPFLSGFS-TTPTAFL 173
+F GF++ F F+ T ++P+L+GFS PTA++
Sbjct: 125 LFDGFILFFLIFVVTFISPWLTGFSFVIPTAYI 157
>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 219
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -1
Query: 466 LSAY-KLFRLGCGCLSLFCFNGPLG 395
+ AY + R+GC CL L C++GP G
Sbjct: 86 VEAYVRCLRMGCRCLELDCWDGPDG 110
>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
Length = 495
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +2
Query: 146 LLQVQRLDSQESCWCRGEP*QEGIHSSVQESKGYQKAAKNLIRRPFKAGARRSLYKVK 319
+L+VQRL +QE C ++ I V++ +G +K + L + + + R L +++
Sbjct: 52 MLEVQRLSAQEKCHQGENLLKDRIQELVEDLEGERKTKQELSAQLIEERSLRELKQIE 109
>SB_5737| Best HMM Match : DED (HMM E-Value=2.9e-18)
Length = 1719
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 162 GLIHKKAVGVVENPDRKGFTVVYKKAKATRKPL 260
G + KK + ++E D++G + +KKA +R+ L
Sbjct: 326 GEVEKKVLKILEQHDKEGVELNFKKASESRQVL 358
>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
Length = 255
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 57 IIRNNNAFLVKKRNIKKPFSKEPNNVT-NLHSFRYNGLIHKKAVGVVENPDRKGFT 221
++ + + FL K PF+ + +V LH +G ++ AV VE R+GFT
Sbjct: 9 LVSSPSDFLCKTIPFSTPFATDSVHVQITLHMDEQSGPTYEAAVNWVEQVCREGFT 64
>SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7)
Length = 437
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 298 PGTSLEWTAD*VF--SGFLVAFAFLYTTVNPFLSGFSTTPTA 179
P ++ W+A V +G LV+ LYT + F+ TPTA
Sbjct: 237 PESNSAWSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTA 278
>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
Length = 770
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 298 PGTSLEWTAD*VF--SGFLVAFAFLYTTVNPFLSGFSTTPTA 179
P ++ W+A V +G LV+ LYT + F+ TPTA
Sbjct: 281 PESNSAWSASSVIGVAGLLVSLIGLYTRRRELAAAFARTPTA 322
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 298 PGTSLEWTAD*VF--SGFLVAFAFLYTTVNPFLSGFSTTPTA 179
P ++ W+A V +G LV+ LYT + F+ TPTA
Sbjct: 1274 PESNSAWSASSVIGVAGLLVSLIGLYTRRRQLAAAFTCTPTA 1315
>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 1586
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 298 PGTSLEWTAD*VF--SGFLVAFAFLYTTVNPFLSGFSTTPTA 179
P ++ W+A V +G LV+ LYT + F+ TPTA
Sbjct: 1101 PESNSAWSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTA 1142
>SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 298 PGTSLEWTAD*VF--SGFLVAFAFLYTTVNPFLSGFSTTPTA 179
P ++ W+A V +G LV+ LYT + F+ TPTA
Sbjct: 444 PESNSAWSASSVIGVAGLLVSLIGLYTRRRELATAFTRTPTA 485
>SB_26625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -1
Query: 298 PGTSLEWTAD*VF--SGFLVAFAFLYTTVNPFLSGFSTTPTA 179
P ++ W+A V +G LV+ LYT + F+ TPTA
Sbjct: 227 PESNSAWSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTA 268
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 169 FTRKLLVSWRTLTGRDSQ*CTRKQRLPESR*K--LNPPSIQGWCQEVTVQSEEVV 327
FTRK L WRT+TGR C LPE R ++PP ++ + S+E +
Sbjct: 1808 FTRKGLGPWRTITGRTCN-C-----LPEIRTNWWIHPPYVRQDHPTTNITSKEYI 1856
>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -3
Query: 173 VNQAVVPEGVEVSHIVRLLAERL--FDIALLHKECIVVADDHPV 48
VN+ V ++ +++L RL D++L++K CI A DH V
Sbjct: 138 VNEVVKKSSKKLYFLIQLKRARLPPSDLSLIYKACIRSAVDHAV 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,320,726
Number of Sequences: 59808
Number of extensions: 283532
Number of successful extensions: 838
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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