Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0455
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            62   2e-10
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    57   8e-09
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   2.3  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    27   7.0  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
 Frame = +3

Query: 45  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 215
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +      + 
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67

Query: 216 FTVVYKKAKATRKP 257
             +   K K   KP
Sbjct: 68  VVLATTKTKKQNKP 81



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +2

Query: 335 NHYRTDLCKATLRRASAILRSQR 403
           N+YR DL KA L R SAI +  R
Sbjct: 108 NYYRPDLKKAALARLSAISKGLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 56.8 bits (131), Expect = 8e-09
 Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +3

Query: 45  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 215
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 216 FTVVYKKAKATRKP 257
             +   K K   KP
Sbjct: 68  VVLGTTKTKRQNKP 81



 Score = 27.9 bits (59), Expect = 4.0
 Identities = 19/64 (29%), Positives = 34/64 (53%)
 Frame = +2

Query: 212 GIHSSVQESKGYQKAAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAIL 391
           G   + +++K      K+++++ F   +R S     +++  N+YR DL KA L R SAI 
Sbjct: 71  GTTKTKRQNKPKLSVNKSILKKEF---SRMSKVVANQVVD-NYYRPDLKKAALARLSAIS 126

Query: 392 RSQR 403
           +  R
Sbjct: 127 KGLR 130


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 92  AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 196
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +3

Query: 87  KKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKP 257
           K+ + ++   KEP+  T     R N    KKA  V E   RK      KK +  +KP
Sbjct: 770 KQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKP 826


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,835,287
Number of Sequences: 28952
Number of extensions: 195825
Number of successful extensions: 496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)