Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0454
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   2.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    27   2.5  
SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr...    26   4.4  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    26   5.8  
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr...    25   7.7  
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c...    25   7.7  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 259 FSQIYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQ 438
           FS I    N +   N +N +E    I I +       V+Q   I+  ++ED+HE  ++ +
Sbjct: 509 FSNISKKRNSEE-ANDEN-DETNLKIPIPEKKRKFQEVLQSKNILVSSTEDSHEPVKVTE 566

Query: 439 DLYEALSI 462
           D   A+ +
Sbjct: 567 DSQTAIHV 574


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +1

Query: 340 IRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQDLYEA 453
           +RKG+   D + Q+ KI+ K  ++ +EY  +  + YE+
Sbjct: 10  LRKGIFK-DEITQIEKILLKMEDNTYEYVDVFLEKYES 46


>SPCC736.05 |wtf7||wtf element Wtf7|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 563 FKRLVFSKIFLFIYFMDNGGSNFPSTKGWVLFGKILSASYKSCFIL 426
           F  L F+ IF    F         S  GW+LFG      + S FIL
Sbjct: 124 FLLLPFNFIFFACLFFRKASFTDFSLMGWILFGIWCLTCFLSSFIL 169


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 397 KTSEDNHEYERIKQDLYEALSILPNKTHPFV 489
           KT E N    ++  DLY+    +PN T P V
Sbjct: 106 KTEEYNKIISKVTNDLYQYCLAVPNTTLPTV 136


>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 242 WCCRQYGNSELVKRC 198
           WC  Q+G S L +RC
Sbjct: 61  WCIEQHGKSGLTERC 75


>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 465

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 304 PKNHEEIKQNIKIRKGVGDID 366
           P +HEE+K+ +KIR    D+D
Sbjct: 355 PYSHEEVKEILKIRCQEEDVD 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,764
Number of Sequences: 5004
Number of extensions: 53476
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)