Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0454
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)               30   1.5  
SB_47907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)              29   3.5  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        28   8.0  
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
          Length = 684

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
 Frame = +1

Query: 301 NPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQD----LYEALSILP 468
           NP   E IK+  K  K   D D+    +K     ++D H+ ++IKQ+    + + LSI  
Sbjct: 463 NPLGDEVIKKKKKKHK---DKDKTKDKHKTKKVETQDKHKRKKIKQENKEFMLDPLSIPG 519

Query: 469 N--KTHPFVEGKFEPP 510
           N   + P ++ K EPP
Sbjct: 520 NSGSSIPRIKLKLEPP 535


>SB_47907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 571 SLNSKGLYSPKSFFLFISWTMEVQTFL 491
           SL S GLYSPK  F+ + W ++  T L
Sbjct: 6   SLPSSGLYSPKLPFITLKWPVQPYTAL 32


>SB_11854| Best HMM Match : Neuromodulin (HMM E-Value=7.3)
          Length = 531

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
 Frame = +1

Query: 238 HQRL*KFFSQIYPNY----NLQYYCNPKNHEEIKQNIKI---RKGVGDIDRVMQLYKIIT 396
           HQR+ K  S ++P +    N       K  E IK + K    +  +GD+D V  L+ I+T
Sbjct: 394 HQRV-KASSGMHPKHDADDNSHQDIASKRSEPIKPSPKAEEKKSSLGDMDTVSSLFDILT 452

Query: 397 KTSEDNHEYERIKQDLYEALSILPNKTH 480
                N  +   KQD+ E  S    KTH
Sbjct: 453 FGVFSNVLHATSKQDM-EISSATEEKTH 479


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 316  EEIKQNIKIRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQDLYEALSILPNKTHPFVE 492
            E IK+     + + D+   +Q  K   + +E    Y++ +QD  EAL++   K H +VE
Sbjct: 960  EAIKRRTSAEEDLDDMQTELQTLK--DEMAEGQRRYKK-QQDKLEALNVELTKEHEYVE 1015


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/72 (19%), Positives = 35/72 (48%)
 Frame = +1

Query: 268 IYPNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQDLY 447
           ++ N + ++ C+   +++I+  + + K +     V Q  +     ++D H    + QD+ 
Sbjct: 138 VFVNQDSRHACSV--NQDIRHAVSVNKDIRHAYSVNQDIRHAVSVNQDIHHACSVNQDIR 195

Query: 448 EALSILPNKTHP 483
            A+S+  +  HP
Sbjct: 196 HAISVNQDIHHP 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,878,788
Number of Sequences: 59808
Number of extensions: 329694
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)