Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0454
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna synt... 48 6e-06
AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA sy... 48 6e-06
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 33 0.19
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 33 0.19
Z75956-6|CAB61026.2| 472|Caenorhabditis elegans Hypothetical pr... 29 2.3
Z75954-8|CAB61020.2| 472|Caenorhabditis elegans Hypothetical pr... 29 2.3
AJ000259-1|CAA03975.1| 472|Caenorhabditis elegans osm-6 protein. 29 2.3
Z68217-7|CAA92469.2| 301|Caenorhabditis elegans Hypothetical pr... 29 3.1
U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm recept... 29 3.1
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 29 3.1
AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math ... 28 5.4
Z81543-2|CAB04424.1| 309|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical ... 27 9.4
AF098997-14|AAK71402.1| 321|Caenorhabditis elegans Serpentine r... 27 9.4
>U58753-9|AAC24441.2| 441|Caenorhabditis elegans Seryl trna
synthetase protein 1 protein.
Length = 441
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = +1
Query: 274 PNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSE----------DNHEY 423
P+ N ++ + KN E I++NI RKGVGDID+V + + +I K + +Y
Sbjct: 43 PDLNFEFLLDEKNLEAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKY 102
Query: 424 ERIKQDLYEALSILPNKT 477
+++ +LY+ ++PN T
Sbjct: 103 KQLWDELYDEAILIPNMT 120
>AB016796-1|BAA74732.1| 441|Caenorhabditis elegans Seryl-tRNA
synthetase protein.
Length = 441
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = +1
Query: 274 PNYNLQYYCNPKNHEEIKQNIKIRKGVGDIDRVMQLYKIITKTSE----------DNHEY 423
P+ N ++ + KN E I++NI RKGVGDID+V + + +I K + +Y
Sbjct: 43 PDLNFEFLLDEKNLEAIRENILNRKGVGDIDKVHKKWAVIQKMMKSGEKQTNGAVSEQKY 102
Query: 424 ERIKQDLYEALSILPNKT 477
+++ +LY+ ++PN T
Sbjct: 103 KQLWDELYDEAILIPNMT 120
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 572 FTEFKRLVFSKIFLFIYFMDNGGSNFPSTKGWVLFGKILSASYKSCFILSY 420
FTE ++ + S+ F F YF NGGS F +L G++ CF L++
Sbjct: 142 FTEDQKDLRSQFFSFFYFAINGGSLFAIIITPILRGRVQCFGNAHCFPLAF 192
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 33.1 bits (72), Expect = 0.19
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -3
Query: 572 FTEFKRLVFSKIFLFIYFMDNGGSNFPSTKGWVLFGKILSASYKSCFILSY 420
FTE ++ + S+ F F YF NGGS F +L G++ CF L++
Sbjct: 142 FTEDQKDLRSQFFSFFYFAINGGSLFAIIITPILRGRVQCFGNAHCFPLAF 192
>Z75956-6|CAB61026.2| 472|Caenorhabditis elegans Hypothetical
protein R31.3 protein.
Length = 472
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 295 YCNPKNHEEIKQNIKIRKGVGDIDRVM--QLYKII-TKTSEDNHEYERIKQDLYEALSIL 465
Y N +H + Q IK+ G++D+ + KI+ T N ++ + LYEAL++
Sbjct: 265 YTNIPDHIHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMTIRLYEALNLS 324
Query: 466 PNKTHPFVEGKFEPPL 513
P VE +FE P+
Sbjct: 325 PPPL-TLVEPQFELPM 339
>Z75954-8|CAB61020.2| 472|Caenorhabditis elegans Hypothetical
protein R31.3 protein.
Length = 472
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 295 YCNPKNHEEIKQNIKIRKGVGDIDRVM--QLYKII-TKTSEDNHEYERIKQDLYEALSIL 465
Y N +H + Q IK+ G++D+ + KI+ T N ++ + LYEAL++
Sbjct: 265 YTNIPDHIHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMTIRLYEALNLS 324
Query: 466 PNKTHPFVEGKFEPPL 513
P VE +FE P+
Sbjct: 325 PPPL-TLVEPQFELPM 339
>AJ000259-1|CAA03975.1| 472|Caenorhabditis elegans osm-6 protein.
Length = 472
Score = 29.5 bits (63), Expect = 2.3
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 295 YCNPKNHEEIKQNIKIRKGVGDIDRVM--QLYKII-TKTSEDNHEYERIKQDLYEALSIL 465
Y N +H + Q IK+ G++D+ + KI+ T N ++ + LYEAL++
Sbjct: 265 YTNIPDHIHMSQQIKVCMYEGELDQAISSDFMKIMDTSLHSFNLKHWPMTIRLYEALNLS 324
Query: 466 PNKTHPFVEGKFEPPL 513
P VE +FE P+
Sbjct: 325 PPPL-TLVEPQFELPM 339
>Z68217-7|CAA92469.2| 301|Caenorhabditis elegans Hypothetical
protein F58G6.2 protein.
Length = 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 581 SCYFTEFKRLVFSKIFLFIYFMDNGGSNFPSTKGWVLFGKILSASYKSC 435
+CY + + +++SK +Y + N G +FP+ G V ++ SC
Sbjct: 26 NCYISRVQAIIYSKSMASLYIIKN-GFDFPTPVGDVFLSLFVAFIVMSC 73
>U50309-3|AAG24138.2| 343|Caenorhabditis elegans Seven tm receptor
protein 145 protein.
Length = 343
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -3
Query: 491 STKGWVLFGKILSASYKSCFILSYS*LSSEVFVIILYNCITLSISPTPFRILIFCF 324
S K + G L+ Y +CF L S LS++ F L C S+S RIL + F
Sbjct: 76 SLKYFKTLGFNLTCLYCACFALVISLLSAQFFYRFLAVCKPHSLSHGEERILFYLF 131
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 510 IVHEINKKKDFGEYKPFEFSEITRLLNLM 596
+V INK KD+ ++P + +TR+ L+
Sbjct: 77 VVRLINKAKDYSSFQPLDLDTVTRISKLV 105
>AF098504-1|AAC67412.1| 364|Caenorhabditis elegans Btb and math
domain containingprotein 25 protein.
Length = 364
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 607 FSILIKFNNLVISLNSKGLYSPKSFFLFISWTMEVQ 500
FS+ KF N+ +N + Y P I W M++Q
Sbjct: 8 FSLKQKFTNVSCMVNHEKRYGPSQVHFDIPWRMKIQ 43
>Z81543-2|CAB04424.1| 309|Caenorhabditis elegans Hypothetical
protein F49B2.2 protein.
Length = 309
Score = 27.5 bits (58), Expect = 9.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 564 FSEITRLLNLMRIEKLGHTCGHKSY 638
+ E+ R +++++ EKL TC H S+
Sbjct: 162 YDEVIRSISILKSEKLHITCNHNSF 186
>AL032655-2|CAB60457.1| 561|Caenorhabditis elegans Hypothetical
protein Y6B3B.4 protein.
Length = 561
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 340 IRKGVGDIDRVMQLYKIITKTSEDNHEYERIKQD 441
IR+ D RVM++ K I EDN YE + +D
Sbjct: 282 IRRAKDDDQRVMEV-KFIATLQEDNKRYELLAKD 314
>AF098997-14|AAK71402.1| 321|Caenorhabditis elegans Serpentine
receptor, class i protein32 protein.
Length = 321
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 10 LIFII*RSQVLN--KYFILKYATKNDTYYVKLSVLFLHLPL 126
++ I+ +S L+ KY++L Y Y ++L++LF +PL
Sbjct: 30 ILLIVFKSYKLDSFKYYLLAYQVSCANYVLQLTILFQPMPL 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,934,702
Number of Sequences: 27780
Number of extensions: 277890
Number of successful extensions: 733
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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