Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0454
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02390.1 68418.m00162 expressed protein ; expression supporte...    29   2.8  
At1g58280.2 68414.m06630 expressed protein                             28   6.6  
At2g29940.1 68415.m03642 ABC transporter family protein similar ...    27   8.7  
At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative ident...    27   8.7  

>At5g02390.1 68418.m00162 expressed protein ; expression supported
           by MPSS
          Length = 835

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 301 NPKNHEEIKQNIKIRKGVGDIDRVMQLYKI-ITKTSEDNHEYERIKQDLYEALSILPNKT 477
           N     ++KQ  +     G +DR +QLY+    + ++++   E+ K +L E  S LP+K 
Sbjct: 464 NKAEGTKLKQITRASSLCGSLDRYLQLYECSFQREAKNSSNSEKSKMELEE--SALPSKR 521

Query: 478 HPFVEGK 498
            P   G+
Sbjct: 522 APKFLGR 528


>At1g58280.2 68414.m06630 expressed protein
          Length = 338

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 108 VSSSASWYLVSNYHCSSPLIGNILLQLKCYTSL 206
           ++S+ S+Y+ S  H SSPL     L L+C +SL
Sbjct: 1   MTSNLSFYISSVSHLSSPLPSLSRLSLRCCSSL 33


>At2g29940.1 68415.m03642 ABC transporter family protein similar to
           ABC1 protein GI:14331118 from [Nicotiana
           plumbaginifolia]
          Length = 1426

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
 Frame = +3

Query: 492 RKV*TSIVHEINKKKDFGEY-----KPFEFSEITRLLNLMRIEKLGHTCGHK 632
           RK     + E+  KKD  +Y     KP++F  ++ +    R  K GH    K
Sbjct: 435 RKGVADFLQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSK 486


>At1g80820.1 68414.m09482 cinnamoyl-CoA reductase, putative
           identical to CCR2 (GI:12407990), similar to cinnamoyl
           CoA reductase from Eucalyptus gunnii [GI:2058311]
          Length = 332

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 382 YKIITKTSED-NHEYERIKQDLYEALSILPNKTH 480
           YK  T+  +D   E++ IKQ LYE++  L  K H
Sbjct: 283 YKFTTQKIKDLGLEFKPIKQSLYESVKSLQEKGH 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,866,372
Number of Sequences: 28952
Number of extensions: 246505
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)