Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0453
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    77   2e-15
SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces pomb...    27   2.5  
SPAC6G10.03c |||abhydrolase family protein, unknown biological r...    25   7.6  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
 Frame = +1

Query: 52  NPVIIAAQARHTASLIFLHGLGDTGHGW---ASTIAGIRGPHVKVICPTASTMPVTLNNG 222
           N VII     HTA++IFLHGLGD+G GW   A+T +  +  H+K I P A ++PVT+NNG
Sbjct: 6   NSVIINPSVAHTATVIFLHGLGDSGQGWSFMANTWSNFK--HIKWIFPNAPSIPVTVNNG 63

Query: 223 FRMPSWFDL 249
            +MP+W+D+
Sbjct: 64  MKMPAWYDI 72



 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 33/73 (45%), Positives = 45/73 (61%)
 Frame = +3

Query: 273 EDEDGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLS 452
           EDE+GI R+   +H LI  E+  G+P+D++L+GGFSQG         TYP+RLAG+M  S
Sbjct: 81  EDENGILRSAGQLHELIDAELALGIPSDRILIGGFSQGCMVSLYAGLTYPKRLAGIMGHS 140

Query: 453 CWXPXHGYFPGGL 491
            + P    FP  L
Sbjct: 141 GFLPLASKFPSAL 153


>SPCC4E9.02 |cig1|SPCC645.01|cyclin Cig1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 415

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 516 NIGNQQEPLSLQGNNHVEVASRIG 445
           NI  Q EP  ++GNN   ++S  G
Sbjct: 47  NINQQDEPTLIEGNNESSISSSTG 70


>SPAC6G10.03c |||abhydrolase family protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 336 KAGVPADKVLLGGFSQGGXXXXXXXXTYPERLAGVMSLS 452
           + G   +K++L G S GG         YPER+  ++ +S
Sbjct: 166 RIGHGIEKMILVGHSMGGYLSAVYAMQYPERVEKLLLVS 204


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,317,202
Number of Sequences: 5004
Number of extensions: 45925
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)