Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0453
(561 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18) 46 3e-05
SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6) 30 1.5
SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39) 29 2.6
SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4) 29 3.4
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_38231| Best HMM Match : Yippee (HMM E-Value=4) 27 7.9
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_51329| Best HMM Match : Abhydrolase_2 (HMM E-Value=4.6e-18)
Length = 244
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/68 (36%), Positives = 33/68 (48%)
Frame = +3
Query: 249 KNLDATAPEDEDGIERATDLVHGLIADEVKAGVPADKVLLGGFSQGGXXXXXXXXTYPER 428
K+ PE D IER+ LV LI D V +G+ D+++LGG G Y
Sbjct: 78 KDYSPAFPEQIDSIERSCSLVRQLINDLVTSGIRKDRIVLGGCDMGAQIAMHVAYRYLPD 137
Query: 429 LAGVMSLS 452
+AGV LS
Sbjct: 138 VAGVFGLS 145
>SB_12097| Best HMM Match : Birna_VP5 (HMM E-Value=4.6)
Length = 383
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -2
Query: 272 RSCSVQVLKSNHEGIRKPLLSVTGIVEAVGH 180
RSCS++ + H G + P+LS G ++ H
Sbjct: 247 RSCSLRTAQHPHTGTKSPMLSTHGTTPSLAH 277
>SB_3796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1051
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 54 SSNNRRTG*TYSIAYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGF-DYARDAQQR 221
S NN R G Y +T W +H C C+ + Y D RD +R
Sbjct: 46 SQNNNRGGHNVGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRR 102
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +3
Query: 54 SSNNRRTG*TYSIAYIFTRFG*HRSWMGKHDCWHQRPSCQSYMSYGF-DYARDAQQR 221
S NN R G Y +T W +H C C+ + Y D RD +R
Sbjct: 510 SQNNNRGGHNVGNLYYYTGSHVQVQWANQHSCGDMNNECELVLQYMCGDLVRDGTRR 566
>SB_39464| Best HMM Match : 7tm_1 (HMM E-Value=4e-39)
Length = 375
Score = 29.1 bits (62), Expect = 2.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 107 CKNISDAVCLACAAIITGFGSILQFITGKSICAN 6
CK I + CA ++ G+ ++ TGK++C N
Sbjct: 149 CKLIWVVSAIICAPLLYGYSAVQHPYTGKTLCVN 182
>SB_19987| Best HMM Match : MFMR (HMM E-Value=1.4)
Length = 330
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/79 (27%), Positives = 36/79 (45%)
Frame = -1
Query: 378 RNHQAELYLQAHRL*LHQQSTHGRDQWLSQYRLHLQEL*RPGS*IKPRGHTETVVERHGH 199
R+H + Q+ + S+ G Q+R H + GS K + H + +HGH
Sbjct: 124 RSHASSTVAQSSSTVMTASSSSGIGSKHKQHRPHEE-----GSSKKHKSHHSS--RQHGH 176
Query: 198 SRSRRTYNFDMRASDASNR 142
S+S RT ++ +S S R
Sbjct: 177 SKSGRTSSYSSDSSPGSGR 195
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 28.3 bits (60), Expect = 4.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 249 KNLDATAPEDEDGIERATDLVHGLIADEVKAGVPADKVLLGGFSQ 383
+ L + P ED I+ A V L KAG+ ADK+ F Q
Sbjct: 1188 ETLGSVIPPHEDTIKSAECFVCSLYTTSTKAGMTADKIRYWMFCQ 1232
>SB_29026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 661
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 139 STIAGIRGPHVKVICPTASTMPVTLNNGFR 228
+ + G R PH + P+TLNNGF+
Sbjct: 544 AALRGFRNPHDMHVFNYGGAAPLTLNNGFQ 573
>SB_48166| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 221 PLLSVTGIVEAVGHITLT*GPLMPAIVLAHP*PVSPKPCK 102
P L + G +TLT + P + P +PKPCK
Sbjct: 201 PSLGTQAPPPSTGGVTLTTPTVPPRVASTEPTTFTPKPCK 240
>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
Length = 230
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 249 KNLDATAPEDEDGIERATDLVHGLIADEVKAGVPADKVLLGGFSQ 383
+ L + P ED I+ A V L KAG+ ADK+ F Q
Sbjct: 182 ETLGSVIPLHEDTIKSAECFVCSLYTTSTKAGMTADKIRYWMFCQ 226
>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 27.5 bits (58), Expect = 7.9
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +3
Query: 249 KNLDATAPEDEDGIERATDLVHGLIADEVKAGVPADKVLLGGFSQ 383
+ L + P ED I+ A V L KAG+ ADK+ F Q
Sbjct: 724 ETLGSVIPLHEDTIKSAECFVCSLYTTSTKAGMTADKIRYWMFCQ 768
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,766,181
Number of Sequences: 59808
Number of extensions: 366896
Number of successful extensions: 803
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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