Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0447
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    68   1e-12
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    54   2e-08
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   2.4  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    27   3.2  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   3.2  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    27   3.2  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   4.3  
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p...    26   4.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    26   5.6  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    26   5.6  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   5.6  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    25   7.5  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    25   7.5  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 68.1 bits (159), Expect = 1e-12
 Identities = 31/60 (51%), Positives = 39/60 (65%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMAANISKQEQKNNPQAVLDVLKWYDAS 471
           IS P + +H  HVGF+  TGEFTGMP  W  LL  + I+K EQ  +PQAVLD + +Y  S
Sbjct: 147 ISSPFDPKHVTHVGFNYDTGEFTGMPTEWQALLKVSGITKSEQVQHPQAVLDAMAFYSQS 206


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMAANISKQEQKNNPQAVLDVLKWY 462
           +S P N +H VHVG D   G + G+P+ W  LL +++I+KQE    P+AV+  L +Y
Sbjct: 129 VSSPMNPKHQVHVGIDN-EGNYVGLPKEWILLLQSSSITKQECMEEPKAVIQALDFY 184


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 107 KPPAPPVRLTSNRATDRVDSVA-SVDMRPLPKEPDD 211
           +PP PP    S R+T    S+A S D  P P  P D
Sbjct: 281 QPPRPPTN-ASTRSTGTSSSMAHSYDSPPSPSSPSD 315


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 517 TLRIQVPQYQEC-HRVVHLHLHLPTQSIQN 603
           T+ +++P+Y+EC H++     H   + +Q+
Sbjct: 5   TIDLKIPEYEECQHKITDFLSHFKQEQVQD 34


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 113 PAPPVRLTSNRATDRVDSVASVDMRPL 193
           PAPPV+ + + A+ R     +V++RPL
Sbjct: 332 PAPPVKTSPHPASYRPQPTRNVEVRPL 358


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 632 VWS*RWWWGRFWMLCVGR 579
           +W   W W  +W  CVGR
Sbjct: 308 LWVSVWQWEGYWSFCVGR 325


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 83  FDMSSDEDKPPAPPVRLTSNRATDR 157
           + + +D++ PPA PVR  S R+  R
Sbjct: 35  YKLETDDEHPPATPVRGLSTRSQKR 59


>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 74  GPRFDMSSDEDKPPAPPVRLTSNRATDRVDSV 169
           GP +D + D   PP    RLT+ +   R + V
Sbjct: 563 GPEYDQTRDGYYPPGAEKRLTARKRRSRKEEV 594


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 467 ASYHFSTSNTACGLFFCSCLLMFAAIRS 384
           A  H S   T C ++F S LL+F   RS
Sbjct: 173 AKLHLSALFTTCLIYFFSALLVFLVSRS 200


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 385 LLMAANISKQEQKNNPQAVLDVLKW 459
           +L AA    +E+KN+P+ V D+  W
Sbjct: 96  VLPAAKDGYEEEKNSPEEVNDLFSW 120


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -1

Query: 668 FLYWLXVNTCSAVWS*RWWWGRFWML 591
           F YW+ ++    V    W+WG F+ L
Sbjct: 253 FNYWVKMDAHRVVRDYAWYWGDFFFL 278


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 274 NDNKPXISXPTNFEHTVHVGFDAVTGEFTGMPEAW 378
           N +KP    P NF+       D    EF G+ E W
Sbjct: 282 NKDKPCSMDPCNFDGISIPPVDFANTEFVGVSEFW 316


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 403 ISKQEQKNNPQAVLDVLKWYDASATQPPPSKYMTSVRCTLRIQVPQYQECHRVVHLHLHL 582
           + +QEQ    + ++  + +   S T    ++   SV   L     Q     R++ +   L
Sbjct: 128 LKEQEQIREKEILIPFIYYDGTSTTYHVRTRLKDSVGHFLADMKQQIPFLKRILDMDKFL 187

Query: 583 PTQSIQNLPHHH 618
             QS   +PHHH
Sbjct: 188 LVQSDLIIPHHH 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,267,666
Number of Sequences: 5004
Number of extensions: 41615
Number of successful extensions: 118
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)