Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0447
         (668 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1235 - 31972497-31972640,31972783-31972883,31973013-31973070     30   1.9  
05_03_0651 + 16605662-16605722,16605920-16606185                       29   2.5  
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778...    29   3.3  
01_06_1808 - 40023533-40023966,40024078-40024204                       29   4.4  
12_02_0628 + 21357876-21359921                                         28   5.9  
11_03_0127 - 10408628-10409106,10409188-10409821                       28   5.9  
07_03_0032 - 12651989-12652636,12652726-12652956,12653515-126536...    28   5.9  
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325...    28   7.7  

>04_04_1235 - 31972497-31972640,31972783-31972883,31973013-31973070
          Length = 100

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
 Frame = +1

Query: 277 DNKPXISXPTNFEHTVHVGFDAVTGEFT------GMPEAWARLLM 393
           +++  I  PT+ +H  H+G+D +TG  +      G+ + W  LL+
Sbjct: 23  EHEMQIGSPTDVKHVAHIGWDGLTGNASPSWGPLGLLKVWQELLV 67


>05_03_0651 + 16605662-16605722,16605920-16606185
          Length = 108

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 301 PTNFEHTVHVGFDAVTGEFTGMPEAWARLLMAANISKQEQKNNPQAVLDVLKWY 462
           PTN  H +H+  D    E T   E+ A++      SK ++    +A +D  +WY
Sbjct: 26  PTNTTHAIHIADDNEIDEETDEDESTAKIKRDGGGSKMDK--GKRARVDPKRWY 77


>02_05_0936 -
           32875479-32875573,32875794-32876028,32877752-32877848,
           32878863-32878927,32879506-32879571,32879735-32879842,
           32880169-32880303,32880582-32880647,32881172-32881222,
           32881312-32881386,32881834-32881896,32882694-32882783,
           32882903-32883100,32883189-32883315,32883482-32884100,
           32884228-32884265,32884651-32884718,32885056-32885100,
           32885243-32885302,32885510-32885593,32885677-32885868,
           32887361-32887663
          Length = 959

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 430 PQAVLDVLKWYDASATQPPPSKYMTSV 510
           P A  +V  WYDAS   P P  Y  S+
Sbjct: 905 PAATYNVAPWYDASLRHPHPRVYQCSL 931


>01_06_1808 - 40023533-40023966,40024078-40024204
          Length = 186

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMAANISKQEQKNNPQAVLDVLKWYDAS 471
           I  PT+ +H  H+G+D  T   T +  +W R   AA  S      +  + L       A 
Sbjct: 99  IGLPTDVKHVAHIGWDGSTNTTTSL-RSWNR---AAPPSSSASAASTSSAL------PAP 148

Query: 472 ATQPPPSK 495
           A  PPPS+
Sbjct: 149 APPPPPSQ 156


>12_02_0628 + 21357876-21359921
          Length = 681

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 41  KLHKTFNI*KNGPRFDMSSDEDKPPAPPVRLTSNRATDRVDSVASVD 181
           KL +      +  + D S  +  PP PP R  S+  TDR  + +++D
Sbjct: 180 KLKQLARASSSSSKADKSRRDSSPPPPPSRARSSARTDRSAAKSALD 226


>11_03_0127 - 10408628-10409106,10409188-10409821
          Length = 370

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 562 VHLHLHLPTQSIQNLPHHHRHD--QTALQ 642
           V +H  +P++S    P  HRHD  +TA+Q
Sbjct: 41  VEVHTRVPSESDYRFPTRHRHDLPETAMQ 69


>07_03_0032 -
           12651989-12652636,12652726-12652956,12653515-12653634,
           12653768-12653891,12654023-12654366
          Length = 488

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369
           I  PT+  H  HV FD + G F G+P
Sbjct: 76  IGWPTDVRHVAHVTFDRLNG-FLGLP 100


>01_06_1506 +
           37830468-37830600,37830703-37830920,37832078-37832529,
           37832595-37833402,37834986-37835073,37835196-37835299,
           37835402-37835483,37836670-37836923
          Length = 712

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 277 DNKPXISXPTNFEHTVHVGFDAVTG 351
           +++  I  PT+ +H  H+G+D+ TG
Sbjct: 570 EHQMEIGYPTDVKHVTHIGWDSPTG 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,034
Number of Sequences: 37544
Number of extensions: 284863
Number of successful extensions: 1092
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)