Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0447
(668 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 122 3e-28
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0) 49 4e-06
SB_56994| Best HMM Match : PBD (HMM E-Value=9.4e-11) 43 2e-04
SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3) 32 0.37
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17) 32 0.49
SB_54208| Best HMM Match : fn3 (HMM E-Value=0) 30 2.0
SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3) 29 3.4
SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10) 29 4.5
SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07) 29 4.5
SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 122 bits (294), Expect = 3e-28
Identities = 59/102 (57%), Positives = 72/102 (70%), Gaps = 1/102 (0%)
Frame = +1
Query: 280 NKPXISXPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMAANISKQEQKNNPQAVLDVLKW 459
NKP IS PT FEHT+HVGFD VTGEFTGMPEAWARLL +NI++ EQK NPQAVLDVL +
Sbjct: 16 NKPEISYPTQFEHTIHVGFDPVTGEFTGMPEAWARLLQVSNITQAEQKKNPQAVLDVLNF 75
Query: 460 YDASATQPPPSKYMTSVR-CTLRIQVPQYQECHRVVHLHLHL 582
YD+S + P+K+ T+V+ + Q Q Q +R L L
Sbjct: 76 YDSSKDKTEPTKFWTTVKPAYAKSQQQQQQPLNRKGSFRLKL 117
>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 490
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/57 (35%), Positives = 31/57 (54%)
Frame = +1
Query: 280 NKPXISXPTNFEHTVHVGFDAVTGEFTGMPEAWARLLMAANISKQEQKNNPQAVLDV 450
N+P IS P+NFEH H G+D G+F G+P W +L + +P A+ ++
Sbjct: 13 NRPEISTPSNFEHRFHTGYDLSGGKFFGLPPQWEAVLGIKEPKRPPPLVDPDAITEM 69
>SB_56994| Best HMM Match : PBD (HMM E-Value=9.4e-11)
Length = 197
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = +1
Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMPEAWARLL 390
IS PTNF+H VHV D TG+F G+P W ++
Sbjct: 25 ISTPTNFQHRVHVIVDKDTGQFIGLPPQWIAIM 57
>SB_27422| Best HMM Match : Dynamin_N (HMM E-Value=3)
Length = 485
Score = 32.3 bits (70), Expect = 0.37
Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +2
Query: 86 DMSSDEDKPPAPPVRLTSNRATDRVDSVASVDMRPLPKEPDDGSDRXXXT---LXAKIKD 256
D + DE+ PP PP R + R+ SV + M P R + +KD
Sbjct: 372 DDNDDEENPPPPPPRPRKGKPHPRIPSVCATTMPTRKTPPTPALSRMALVPEEIEGLVKD 431
Query: 257 QRVQH 271
R +H
Sbjct: 432 SRTRH 436
>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
Length = 1440
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 86 DMSSDEDKPPAPPVRLTSNRATDRVDSVASVDMRPLPKEPDDGSDRXXXT 235
D D+D PPAP TS+RA R++ + P ++P + +D T
Sbjct: 1063 DKKDDDDAPPAPQDESTSSRAVPRIEEPVN---EPEVEDPQEEADTETET 1109
>SB_54208| Best HMM Match : fn3 (HMM E-Value=0)
Length = 1292
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +2
Query: 77 PRFDMSSDEDKPPAPPVRLTSNRATDRVDSVASVDMRPLPKEPDDG 214
P ++++DED P PP+ LT T+ S V PLP + +G
Sbjct: 393 PAINVTTDEDVPSMPPLNLT---VTNITTSSFFVSWSPLPADSANG 435
>SB_13369| Best HMM Match : UPF0005 (HMM E-Value=0.3)
Length = 509
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Frame = +1
Query: 460 YDASATQPPPSKYMTSVRCTLRIQVPQYQECHRVV-HLHLHLPTQSIQNLPHHHRH 624
+ +S+ PP S +S L P+ HR H H H P S + P H H
Sbjct: 212 FSSSSLSPPSSLQSSSPSRHLHCHRPRLSNHHRPSRHHHCHRPRLSNHHRPSRHLH 267
>SB_37803| Best HMM Match : WH2 (HMM E-Value=1.8e-10)
Length = 514
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Frame = +1
Query: 280 NKPXISXPTNFEHTVHVGFDAVTG------EFTGMPEAWARLLMAANISKQEQKNNPQA 438
+K I P NF+H H+G+D G + + + W +L +S+ + ++ +A
Sbjct: 196 SKDDIGNPENFQHVGHMGWDPQKGFDVKNVDLSKHGDEWVKLFKLFGVSENQMDDSTKA 254
>SB_22497| Best HMM Match : Ras (HMM E-Value=7.7e-07)
Length = 769
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +2
Query: 86 DMSSDEDKPPAPPV--RLTSNRATDRVDSVASVDMRPL 193
D+SSDED+P PP+ N +DR+ S ++P+
Sbjct: 580 DLSSDEDRPAVPPIPNGNIKNDTSDRIMPNRSNPVKPV 617
>SB_30491| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 28.3 bits (60), Expect = 6.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -1
Query: 443 NTACGLFFCSCLLMFAAIRSRAHASGIP 360
NT GL C L++ +I R+H SG P
Sbjct: 834 NTCTGLPIERCFLVYCSIEGRSHLSGNP 861
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,450,331
Number of Sequences: 59808
Number of extensions: 331294
Number of successful extensions: 1018
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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