Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0447
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             31   0.010
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.0  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 31.1 bits (67), Expect = 0.010
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +2

Query: 77   PRFDMSSDEDKPPAPPVRLTSNRATDRVDSVASVDMRPLPKE---PDDGSDR 223
            PR    S ED+    P         +R + V +VD+ P P +    DDGSDR
Sbjct: 1342 PRLAQDSSEDESYRGPSASGGRPVPERPERVPTVDLSPSPSDRGRNDDGSDR 1393


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 122 PVRLTSNRATDRVDSVASVDMRPLPKEPDDGSDRXXXTLXAKIKDQRV 265
           P         D+   + S+DM  LP + DDG D        K +D+RV
Sbjct: 317 PPETEEEEENDKKLDLDSIDMMQLPIQLDDGIDILD---DVKCEDERV 361


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 607 PHHHRHDQT 633
           PHHH H QT
Sbjct: 350 PHHHHHHQT 358


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 490 KEEVELQTHHTISVHLIRPVDCSSVLVY 407
           KE+V+  + +T  V  IR  DC S + Y
Sbjct: 299 KEQVKEDSLYTNIVVDIRNEDCGSAIAY 326


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 83  FDMSSDEDKPPAPPVR 130
           FD+  DE  PP PP+R
Sbjct: 369 FDL--DEPLPPPPPIR 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,743
Number of Sequences: 438
Number of extensions: 3046
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)