BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0447 (668 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr... 32 0.30 At5g16490.1 68418.m01927 p21-rho-binding domain-containing prote... 31 0.52 At2g27440.1 68415.m03316 rac GTPase activating protein, putative... 30 1.6 At5g22400.1 68418.m02613 rac GTPase activating protein, putative... 29 2.1 At1g08340.1 68414.m00922 rac GTPase activating protein, putative... 29 2.1 At5g53590.1 68418.m06658 auxin-responsive family protein similar... 29 2.8 At5g55130.1 68418.m06872 molybdenum cofactor synthesis protein 3... 28 4.9 At4g03100.1 68417.m00418 rac GTPase activating protein, putative... 28 4.9 At1g04530.1 68414.m00445 expressed protein 28 6.5 At2g39270.1 68415.m04822 adenylate kinase family protein contain... 27 8.5 At2g37250.1 68415.m04570 adenylate kinase family protein contain... 27 8.5 >At4g39600.1 68417.m05598 kelch repeat-containing F-box family protein similar to SKP1 interacting partner 6 [Arabidopsis thaliana] GI:10716957; contains Pfam profiles PF01344: Kelch motif, PF00646: F-box domain Length = 367 Score = 32.3 bits (70), Expect = 0.30 Identities = 14/51 (27%), Positives = 30/51 (58%) Frame = +1 Query: 370 EAWARLLMAANISKQEQKNNPQAVLDVLKWYDASATQPPPSKYMTSVRCTL 522 E+ +++ A IS Q++ NN + + ++W+DA T P K++ ++ T+ Sbjct: 318 ESKEKMIWCAEISLQKKCNNEE-IWGTVEWFDAVLTVPEDCKFVRAIAATV 367 >At5g16490.1 68418.m01927 p21-rho-binding domain-containing protein contains Pfam PF00786: P21-Rho-binding domain Length = 153 Score = 31.5 bits (68), Expect = 0.52 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = +1 Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMPEAWARL----LMAANISKQE 417 I PTN +H H+G+++ TG + W L L+AA SK+E Sbjct: 99 IGVPTNVKHVSHIGWESGLTAATGPGKGWEDLIPPELLAAAASKKE 144 >At2g27440.1 68415.m03316 rac GTPase activating protein, putative similar to rac GTPase activating protein 3 [Lotus japonicus] GI:3695063; contains Pfam profiles PF00620: RhoGAP domain, PF00786: P21-Rho-binding domain Length = 368 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +1 Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369 IS PTN H HV +D G F G+P Sbjct: 89 ISRPTNISHVAHVTYDRFDG-FLGLP 113 >At5g22400.1 68418.m02613 rac GTPase activating protein, putative similar to rac GTPase activating protein 1 [Lotus japonicus] GI:3695059; contains Pfam profile PF00620: RhoGAP domain Length = 466 Score = 29.5 bits (63), Expect = 2.1 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369 I PTN H HV FD G F G+P Sbjct: 117 IGWPTNVRHVAHVTFDRFNG-FLGLP 141 >At1g08340.1 68414.m00922 rac GTPase activating protein, putative similar to rac GTPase activating protein 1 GI:3695059 from [Lotus japonicus]; contains Pfam profile PF00620: RhoGAP domain Length = 331 Score = 29.5 bits (63), Expect = 2.1 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369 I PTN H HV FD G F G+P Sbjct: 3 IGGPTNIRHVAHVTFDRFDG-FLGLP 27 >At5g53590.1 68418.m06658 auxin-responsive family protein similar to indole-3-acetic acid induced protein ARG7 (SP:P32295) [Vigna radiata] Length = 142 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = +1 Query: 553 HRVVHLHLHLPTQSIQNLPHHHRH 624 H V H H+P I LPHHH H Sbjct: 20 HMVFKFHFHVPHLHI--LPHHHHH 41 >At5g55130.1 68418.m06872 molybdenum cofactor synthesis protein 3 / molybdopterin synthase sulphurylase (CNX5) identical to SP|Q9ZNW0 Molybdenum cofactor synthesis protein 3 (Molybdopterin synthase sulfurylase) (MPT synthase sulfurylase) {Arabidopsis thaliana}; contains Pfam profiles PF00899: ThiF family, PF00581: Rhodanese-like domain, PF05237: MoeZ/MoeB domain Length = 464 Score = 28.3 bits (60), Expect = 4.9 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 442 LDVLKWYD--ASATQPPPSKYMTSVRCTL 522 L++L YD AT PPS+YM S C L Sbjct: 176 LEILSQYDIIVDATDNPPSRYMISDCCVL 204 >At4g03100.1 68417.m00418 rac GTPase activating protein, putative similar to rac GTPase activating protein 3 [Lotus japonicus] GI:3695063; contains Pfam profile PF00620: RhoGAP domain Length = 430 Score = 28.3 bits (60), Expect = 4.9 Identities = 13/26 (50%), Positives = 14/26 (53%) Frame = +1 Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369 I PTN H HV FD G F G+P Sbjct: 80 IGWPTNVRHITHVTFDRFHG-FLGLP 104 >At1g04530.1 68414.m00445 expressed protein Length = 310 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/45 (28%), Positives = 22/45 (48%) Frame = +2 Query: 74 GPRFDMSSDEDKPPAPPVRLTSNRATDRVDSVASVDMRPLPKEPD 208 G R ++ + ++PP+PP+ L + D+ D S LP D Sbjct: 74 GVRDELGFEIERPPSPPMHLAAGLGIDKFDLYGSEIKFDLPGYDD 118 >At2g39270.1 68415.m04822 adenylate kinase family protein contains Pfam profile: PF00406: adenylate kinase Length = 295 Score = 27.5 bits (58), Expect = 8.5 Identities = 10/20 (50%), Positives = 15/20 (75%) Frame = +1 Query: 361 GMPEAWARLLMAANISKQEQ 420 G+PE+WARLL A ++ +Q Sbjct: 272 GIPESWARLLRALHLEDDKQ 291 >At2g37250.1 68415.m04570 adenylate kinase family protein contains Pfam profile: PF00406 adenylate kinase Length = 284 Score = 27.5 bits (58), Expect = 8.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 361 GMPEAWARLLMAANISKQEQKNNPQA 438 G+PE+W RLL A + E+K + A Sbjct: 259 GIPESWPRLLEALRLDDYEEKQSVAA 284 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,860,993 Number of Sequences: 28952 Number of extensions: 219764 Number of successful extensions: 713 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 711 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1412971776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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