Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0447
         (668 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g39600.1 68417.m05598 kelch repeat-containing F-box family pr...    32   0.30 
At5g16490.1 68418.m01927 p21-rho-binding domain-containing prote...    31   0.52 
At2g27440.1 68415.m03316 rac GTPase activating protein, putative...    30   1.6  
At5g22400.1 68418.m02613 rac GTPase activating protein, putative...    29   2.1  
At1g08340.1 68414.m00922 rac GTPase activating protein, putative...    29   2.1  
At5g53590.1 68418.m06658 auxin-responsive family protein similar...    29   2.8  
At5g55130.1 68418.m06872 molybdenum cofactor synthesis protein 3...    28   4.9  
At4g03100.1 68417.m00418 rac GTPase activating protein, putative...    28   4.9  
At1g04530.1 68414.m00445 expressed protein                             28   6.5  
At2g39270.1 68415.m04822 adenylate kinase family protein contain...    27   8.5  
At2g37250.1 68415.m04570 adenylate kinase family protein contain...    27   8.5  

>At4g39600.1 68417.m05598 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 367

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/51 (27%), Positives = 30/51 (58%)
 Frame = +1

Query: 370 EAWARLLMAANISKQEQKNNPQAVLDVLKWYDASATQPPPSKYMTSVRCTL 522
           E+  +++  A IS Q++ NN + +   ++W+DA  T P   K++ ++  T+
Sbjct: 318 ESKEKMIWCAEISLQKKCNNEE-IWGTVEWFDAVLTVPEDCKFVRAIAATV 367


>At5g16490.1 68418.m01927 p21-rho-binding domain-containing protein
           contains Pfam PF00786: P21-Rho-binding domain
          Length = 153

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMPEAWARL----LMAANISKQE 417
           I  PTN +H  H+G+++     TG  + W  L    L+AA  SK+E
Sbjct: 99  IGVPTNVKHVSHIGWESGLTAATGPGKGWEDLIPPELLAAAASKKE 144


>At2g27440.1 68415.m03316 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 3 [Lotus
           japonicus] GI:3695063; contains Pfam profiles PF00620:
           RhoGAP domain, PF00786: P21-Rho-binding domain
          Length = 368

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369
           IS PTN  H  HV +D   G F G+P
Sbjct: 89  ISRPTNISHVAHVTYDRFDG-FLGLP 113


>At5g22400.1 68418.m02613 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 [Lotus
           japonicus] GI:3695059; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 466

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369
           I  PTN  H  HV FD   G F G+P
Sbjct: 117 IGWPTNVRHVAHVTFDRFNG-FLGLP 141


>At1g08340.1 68414.m00922 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 1 GI:3695059
           from [Lotus japonicus]; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 331

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369
           I  PTN  H  HV FD   G F G+P
Sbjct: 3   IGGPTNIRHVAHVTFDRFDG-FLGLP 27


>At5g53590.1 68418.m06658 auxin-responsive family protein similar to
           indole-3-acetic acid induced protein ARG7 (SP:P32295)
           [Vigna radiata]
          Length = 142

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 553 HRVVHLHLHLPTQSIQNLPHHHRH 624
           H V   H H+P   I  LPHHH H
Sbjct: 20  HMVFKFHFHVPHLHI--LPHHHHH 41


>At5g55130.1 68418.m06872 molybdenum cofactor synthesis protein 3 /
           molybdopterin synthase sulphurylase (CNX5) identical to
           SP|Q9ZNW0 Molybdenum cofactor synthesis protein 3
           (Molybdopterin synthase sulfurylase) (MPT synthase
           sulfurylase) {Arabidopsis thaliana}; contains Pfam
           profiles PF00899: ThiF family, PF00581: Rhodanese-like
           domain, PF05237: MoeZ/MoeB domain
          Length = 464

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 442 LDVLKWYD--ASATQPPPSKYMTSVRCTL 522
           L++L  YD    AT  PPS+YM S  C L
Sbjct: 176 LEILSQYDIIVDATDNPPSRYMISDCCVL 204


>At4g03100.1 68417.m00418 rac GTPase activating protein, putative
           similar to rac GTPase activating protein 3 [Lotus
           japonicus] GI:3695063; contains Pfam profile PF00620:
           RhoGAP domain
          Length = 430

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 292 ISXPTNFEHTVHVGFDAVTGEFTGMP 369
           I  PTN  H  HV FD   G F G+P
Sbjct: 80  IGWPTNVRHITHVTFDRFHG-FLGLP 104


>At1g04530.1 68414.m00445 expressed protein
          Length = 310

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 74  GPRFDMSSDEDKPPAPPVRLTSNRATDRVDSVASVDMRPLPKEPD 208
           G R ++  + ++PP+PP+ L +    D+ D   S     LP   D
Sbjct: 74  GVRDELGFEIERPPSPPMHLAAGLGIDKFDLYGSEIKFDLPGYDD 118


>At2g39270.1 68415.m04822 adenylate kinase family protein contains
           Pfam profile: PF00406: adenylate kinase
          Length = 295

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 361 GMPEAWARLLMAANISKQEQ 420
           G+PE+WARLL A ++   +Q
Sbjct: 272 GIPESWARLLRALHLEDDKQ 291


>At2g37250.1 68415.m04570 adenylate kinase family protein contains
           Pfam profile: PF00406 adenylate kinase
          Length = 284

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 361 GMPEAWARLLMAANISKQEQKNNPQA 438
           G+PE+W RLL A  +   E+K +  A
Sbjct: 259 GIPESWPRLLEALRLDDYEEKQSVAA 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,993
Number of Sequences: 28952
Number of extensions: 219764
Number of successful extensions: 713
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)