Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0446
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21H7.06c |||inositol metabolism protein Opi10 |Schizosacchar...    66   8e-12
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   4.5  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    26   7.9  

>SPBC21H7.06c |||inositol metabolism protein Opi10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 200

 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 30/77 (38%), Positives = 45/77 (58%)
 Frame = +2

Query: 74  VFGLIVSGRLVHTDFSPIAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAMVYWSWPD 253
           +FG I +GRLV T+   +A+ +F+  +  A+S+NH+ VFL    P P G  A VY+ WP 
Sbjct: 1   MFGAICAGRLVQTNLQQVADNQFVFQLDSAESLNHIVVFLLPNSPFPVGMGAKVYFQWPG 60

Query: 254 QPHLLTGSYLVTFRTSS 304
           +P    G YL   + S+
Sbjct: 61  KPFQFLG-YLTNEKPSA 76



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
 Frame = +3

Query: 495 ICSEKLENLVNFVASFSVTQDQMTPT------PGVSYIPLNTLHTWYQNFERRLQQNPNF 656
           +  + L NL NF+ASF+ +Q            P  ++IPL     W+  F  +L  NPNF
Sbjct: 134 VAQKILTNLYNFLASFATSQLPPNSIGLGDLRPNDTFIPLRVFQDWHAKFLNKLSNNPNF 193



 Score = 33.5 bits (73), Expect = 0.039
 Identities = 20/57 (35%), Positives = 31/57 (54%)
 Frame = +1

Query: 271 WQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQICHNAQIGISIEPEAN 441
           +Q LG+++N KPSAIF++ N   +  L+     +G          A +GIS+EP  N
Sbjct: 63  FQFLGYLTNEKPSAIFRLKN--TIQTLSENENCVGI--------TAMLGISVEPLTN 109


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 352 TNENKFMGTFGQQQICHNAQIGISIEPEA--NVQLLASSVALQETNNYVTFAQ 504
           T + KF+ T G  Q+    Q+G   EP++  N Q   + +A+ E N + T ++
Sbjct: 22  TRDGKFLLTVGSNQVIRKFQVGSDEEPDSIDNHQDPITGIAVAE-NYFCTCSE 73


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +3

Query: 492 DICSEKLENLVNFVASF-SVTQDQMTPTPGVSYIPLNTLHTWYQNFERRLQQ 644
           D  S  L+N  + +    S+ ++        S++PLNT H  Y+  ++R+ Q
Sbjct: 171 DKYSSALQNKYHLIKILTSLIEESKRNAEKFSHVPLNTGHWKYKKCDKRMPQ 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,351,476
Number of Sequences: 5004
Number of extensions: 65754
Number of successful extensions: 159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)