Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0446
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0643 - 16515183-16515758,16516502-16516532,16516717-165167...    31   1.2  
05_03_0384 - 13361999-13362120,13362241-13362252,13362921-133629...    29   4.8  
05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335           29   4.8  
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576...    29   6.3  
04_01_0631 + 8381361-8381560,8381918-8382020,8382604-8383497           28   8.3  
02_02_0181 + 7541831-7541971,7542407-7543279,7544101-7544301,754...    28   8.3  

>05_03_0643 -
           16515183-16515758,16516502-16516532,16516717-16516756,
           16517183-16517243
          Length = 235

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 471 PRNKQLCDICSEKLENLVNFVASFSVTQDQMTPTPGVSYIPLN 599
           PRN  L   C EKLE+  +  A+ S+    +TP   V+Y P N
Sbjct: 148 PRNTSL--YCKEKLESSSSVAANSSLQSTAVTPIADVAYHPSN 188


>05_03_0384 -
           13361999-13362120,13362241-13362252,13362921-13362981,
           13363049-13363202,13364653-13364788,13365020-13365290,
           13365654-13365962
          Length = 354

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 631 LSKFWYHV*RVFSGMYE-TPGVGVI*SCVTENDATKLTKFSNFSEQMSHSCLFLGVQQMK 455
           ++ F Y   R+ S M E T G  ++   VT    T LT  SN+S++     LF+  ++M 
Sbjct: 51  VTTFIYRHGRLLSAMREKTSGKNLLRPAVTRFATTYLTLKSNYSQRDELRSLFIHTKKMN 110

Query: 454 PIV 446
            +V
Sbjct: 111 QLV 113


>05_03_0014 - 7372231-7372984,7373065-7373120,7375012-7375335
          Length = 377

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 838 TAKAKILSKIFTLVEPYQLHFIR*LMPSEQAYLVFINQNLN 716
           + +A+IL     +  P Q+HF   + PS+  Y ++ NQ  N
Sbjct: 326 STQAQILQNRIPIQHPNQIHFSTQIHPSQIPYQIYQNQTQN 366


>12_01_0676 +
           5765154-5765241,5765329-5765453,5765533-5765604,
           5765728-5765802,5765880-5765905,5766709-5766870,
           5766963-5767037,5767133-5767204,5767289-5767363,
           5767461-5767529,5767839-5767910,5768030-5768161,
           5768430-5768920,5769315-5769476,5769570-5769709,
           5769818-5770037,5770398-5770633,5771560-5772051
          Length = 927

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 280 LGHISNIKPSAIFKISNLKKLHELTNENKFMGT 378
           +  +S   PS IF  SN+K +H L + NKF G+
Sbjct: 187 INQLSGSIPSQIFN-SNMKLIHLLLDNNKFSGS 218


>04_01_0631 + 8381361-8381560,8381918-8382020,8382604-8383497
          Length = 398

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 462 CCTPRNKQLCDICSEKLENLVNFVASFSVTQD 557
           C  P NK     C+  LE++V+FVAS   T+D
Sbjct: 250 CELPANKGEKKACATSLESMVDFVASSLGTRD 281


>02_02_0181 +
           7541831-7541971,7542407-7543279,7544101-7544301,
           7544358-7544595,7545732-7545922
          Length = 547

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/49 (26%), Positives = 29/49 (59%)
 Frame = +3

Query: 468 TPRNKQLCDICSEKLENLVNFVASFSVTQDQMTPTPGVSYIPLNTLHTW 614
           T   +++CD+C  +LE++  ++ +  +++    PT  V+   L+TL +W
Sbjct: 268 TSEPQRVCDVCGVRLESIQPYLIN-RISRASQPPTHDVT--DLSTLRSW 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,226,214
Number of Sequences: 37544
Number of extensions: 409222
Number of successful extensions: 1029
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)