Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0446
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41690| Best HMM Match : DSL (HMM E-Value=0)                         32   0.52 
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)                   31   0.91 
SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.8  
SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)                 29   6.4  
SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
          Length = 2798

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -3

Query: 771  GNSCRASKHI*FLLIRTLIHTAA*HSHYITITDLINSSRN*DSAGAFSQSSGTTCEGCSA 592
            GN+C +SKH    +   L+ +   +S Y  I   +       S    +Q S  +CE CS 
Sbjct: 2392 GNNCTSSKHSQSSIFPELLSSTTTYSSYSKIPSTVILPSASPSRWRLTQLSSQSCESCST 2451

Query: 591  GCMKHQ 574
               K Q
Sbjct: 2452 RTSKSQ 2457


>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
          Length = 681

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = -3

Query: 771 GNSCRASKHI*FLLIRTLIHTAA*HSHYITITDLINSSRN*DSAGAFSQSSGTTCEGCSA 592
           GN+C +SKH    +   L+ +   +S Y  I   +       S    +Q S  +CE CS 
Sbjct: 383 GNNCTSSKHSQSSIFPELLISTTTYSSYSKIPSTVILPSASPSRWRLTQLSSQSCESCST 442

Query: 591 GCMKHQ 574
              K Q
Sbjct: 443 RTSKSQ 448


>SB_6397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -3

Query: 657 RN*DSAGAFSQSSGTTCEG 601
           RN DS G+ SQSSG  CEG
Sbjct: 160 RNWDSQGSLSQSSGQICEG 178


>SB_10061| Best HMM Match : Gemini_C4 (HMM E-Value=2.1)
          Length = 212

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 22/94 (23%), Positives = 43/94 (45%)
 Frame = +1

Query: 280 LGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQICHNAQIGISIEPEANVQLLAS 459
           + +IS ++ +  F+ISN+ +L    N N  +    + ++  N  I    E   NV +  S
Sbjct: 66  ISNISELRVNVNFRISNISELR--VNVNVRISNISELRVNMNVHISNISELRVNVNVHIS 123

Query: 460 SVALQETNNYVTFAQKS*KT*SIL*HHSLLRKIR 561
            ++    N  V  +  S    ++  H S++ K+R
Sbjct: 124 IISELRVNVNVRISNISELRVNVNVHISIISKLR 157


>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -2

Query: 529 KLTKFSNFSEQMSHSCLFLGVQ 464
           ++ K SNF+E+ +H CLF  +Q
Sbjct: 78  RMIKNSNFNEKEAHGCLFRSIQ 99


>SB_53694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 900

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +1

Query: 280 LGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQICHNAQIGISIEPEANVQLLAS 459
           L H++      IFK  +L+ L ++  E  +  T+  +   H+    + I+ E    L  S
Sbjct: 220 LRHVNGYLVKQIFKYEDLRSLSQVIEEGNWFFTWDLKSGYHH----VDIDEEHQQYLWFS 275

Query: 460 SVALQETNNYVTF 498
            V +  T  Y TF
Sbjct: 276 WVFIDGTRRYFTF 288


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,888,639
Number of Sequences: 59808
Number of extensions: 486796
Number of successful extensions: 1179
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)