Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0446
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038613-4|AAB92052.3|  162|Caenorhabditis elegans Hypothetical ...    58   8e-09
AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical...    32   0.46 
Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z66495-9|CAH19100.1|  670|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z66495-8|CAA91274.1|  680|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF038613-4|AAB92052.3|  162|Caenorhabditis elegans Hypothetical
           protein F42A6.6 protein.
          Length = 162

 Score = 58.0 bits (134), Expect = 8e-09
 Identities = 27/52 (51%), Positives = 35/52 (67%)
 Frame = +2

Query: 65  MTNVFGLIVSGRLVHTDFSPIAETRFLTTITEADSINHVAVFLTGAVPLPPG 220
           M+ +FG+IVSGR    +  P+++T F   I  AD+INHV VFLTGA P P G
Sbjct: 1   MSGIFGVIVSGR-TPIEVVPVSDTEFTCEIVNADAINHVVVFLTGAQPFPDG 51



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +1

Query: 268 NWQLLGHISNIKPSAIFKISNLKKLHELTNENKFMGTFGQQQI--CHNAQIGISIEPEAN 441
           NW  LG I N KPSAI+K++   +LH+    + F     Q Q+    +AQIGI+ E  ++
Sbjct: 83  NWHYLGFICNEKPSAIYKVA---QLHKSDASHSFSQFDNQMQLYSSGSAQIGINAESLSD 139

Query: 442 V 444
           +
Sbjct: 140 I 140


>AL132862-15|CAB60549.1|  703|Caenorhabditis elegans Hypothetical
           protein Y73F8A.21 protein.
          Length = 703

 Score = 32.3 bits (70), Expect = 0.46
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
 Frame = +3

Query: 459 ICCTPRNKQLCDICSEKLENLVNFVAS--FSVTQD-QMTPTPGVSYIPLNTLHTWYQNFE 629
           IC  P  K + D   EK+  L N +A   FS+ ++ +++PTP V Y  +           
Sbjct: 343 ICLNPLAKDVSDSLFEKIVELRNRIADCLFSIVKEVRLSPTPNVCYGHILLSLATVTELA 402

Query: 630 RRLQQNPNFWKN*SNQ 677
             + +N  F +  SNQ
Sbjct: 403 NAMSENLQFAQTFSNQ 418


>Z73906-8|CAA98120.3|  511|Caenorhabditis elegans Hypothetical
           protein D2030.8 protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/76 (26%), Positives = 31/76 (40%)
 Frame = +3

Query: 372 GHIWTAADMSQCTNRNIY*A*SQCATIGFICCTPRNKQLCDICSEKLENLVNFVASFSVT 551
           GH+ TA  ++   NR           I  + C     + CD      E L   + + S+ 
Sbjct: 302 GHLTTAWHLTDLVNRKWPLTTKNQTNIELLHCATEFLEKCDNGKHNNEILHQNLRAMSLD 361

Query: 552 QDQMTPTPGVSYIPLN 599
           Q ++T +PG S  P N
Sbjct: 362 QCEITSSPGTSENPNN 377


>Z66495-9|CAH19100.1|  670|Caenorhabditis elegans Hypothetical
           protein C36A4.9b protein.
          Length = 670

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 IAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAMVYW 241
           ++    + T  + ++  H+   L GA P+ PG AAM ++
Sbjct: 425 LSNVSIVDTYWQTETGGHMITCLPGATPMKPGAAAMPFF 463


>Z66495-8|CAA91274.1|  680|Caenorhabditis elegans Hypothetical
           protein C36A4.9a protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 125 IAETRFLTTITEADSINHVAVFLTGAVPLPPGTAAMVYW 241
           ++    + T  + ++  H+   L GA P+ PG AAM ++
Sbjct: 435 LSNVSIVDTYWQTETGGHMITCLPGATPMKPGAAAMPFF 473


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,658,660
Number of Sequences: 27780
Number of extensions: 377580
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)