Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0446
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.51 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    25   0.90 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   8.4  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 588 IPLNTLHTWYQNFERRLQQNPNFWKN 665
           + LN ++ W+QN     ++N   WKN
Sbjct: 525 LTLNEIYNWFQNTFCYFRRNAATWKN 550


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 25.0 bits (52), Expect = 0.90
 Identities = 11/49 (22%), Positives = 24/49 (48%)
 Frame = +1

Query: 301 KPSAIFKISNLKKLHELTNENKFMGTFGQQQICHNAQIGISIEPEANVQ 447
           KP   F       LH +T+ NKF+  +   ++ +++++ I      N++
Sbjct: 87  KPDTYFYNGKHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNLE 135


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 678 TDLINSSRN*DSAGAFSQSSGTTCEGCSAG 589
           T LIN++    ++   S+S+GT+C+  S G
Sbjct: 8   TTLINAAFLCLASTILSESAGTSCKWLSEG 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,963
Number of Sequences: 438
Number of extensions: 4528
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)