Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0446
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66080.1 68414.m07500 expressed protein                             31   1.3  
At1g20610.1 68414.m02575 cyclin, putative similar to G2/mitotic-...    30   2.3  
At2g37800.1 68415.m04641 DC1 domain-containing protein contains ...    28   9.2  

>At1g66080.1 68414.m07500 expressed protein
          Length = 190

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 513 ENLVNFVASFSVTQDQMTPTPGVSYIPLNTLHTWYQNFERRLQQNPNFWKN 665
           ENL NF+ SF               +P++ L  W++ F+ + +++P+F K+
Sbjct: 143 ENLFNFMQSFCGVDGSKL------VVPMDILDRWFKKFQEKAKRDPDFLKS 187


>At1g20610.1 68414.m02575 cyclin, putative similar to
           G2/mitotic-specific cyclins (B-like cyclin) from
           {Medicago varia} SP|P46278, SP|P46277; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 429

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 555 DQMTPTPGVSYIPLNTLHTWYQNFERRLQQNPNFWKN 665
           D+  P   V YI  + +HT+Y+NFE+     PN+  N
Sbjct: 167 DKNNPLAAVEYI--HDMHTFYKNFEKLSCVPPNYMDN 201


>At2g37800.1 68415.m04641 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 396

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 468 TPRNKQLCDICSEKLENL 521
           T +NK++CDIC E  E L
Sbjct: 217 THQNKRMCDICDESAEGL 234


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,304,925
Number of Sequences: 28952
Number of extensions: 337833
Number of successful extensions: 830
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)