Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0445
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639...    29   2.6  
12_01_1033 + 10629897-10632311,10633874-10633879                       29   3.4  
05_02_0008 + 5553948-5554220                                           28   7.9  

>09_06_0086 -
           20763085-20763162,20763233-20763286,20763287-20763975,
           20764173-20764324,20764404-20764604,20764920-20765064,
           20765552-20765588,20765880-20765965,20766093-20766329,
           20766501-20766609,20767025-20767135
          Length = 632

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 241 DNFHSVISRK*GDAFRNEQASGRTHSS 321
           ++ HSVI RK  D   NE +SG +H+S
Sbjct: 410 NDLHSVIKRKIRDQLLNEGSSGNSHNS 436


>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 409 VLHKVTKQQDDDHRTGSCRRH 471
           V H      DDDHRT  CR H
Sbjct: 226 VAHPADDDDDDDHRTRRCRTH 246


>05_02_0008 + 5553948-5554220
          Length = 90

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
 Frame = +2

Query: 461 VAGTPD-ESIISDEEEPQWR--ALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPV 631
           VAG+ D E+       P+W     T+   P  P +  P   +L  E L   P R    P+
Sbjct: 7   VAGSEDGEAPAHGNPAPEWGEGCSTVALTPIVPLVSKPTARLLPLEQLLLDPDREKAAPM 66

Query: 632 SLKR 643
           S  R
Sbjct: 67  SRTR 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,985,587
Number of Sequences: 37544
Number of extensions: 320015
Number of successful extensions: 873
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)