Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0445
         (681 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)          36   0.023
SB_19072| Best HMM Match : RIIa (HMM E-Value=3.5e-07)                  34   0.093
SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.86 
SB_21541| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)                    30   2.0  
SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)                   29   4.6  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_58379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +1

Query: 535 KSVFAETYDPEEDDSDEGAPAVFPKSDAQRARLAEAV 645
           +SV AE + P+ +D  +  P V+PK+D QR RL +A+
Sbjct: 102 QSVCAEPFHPDSEDEGDEQPIVYPKTDEQRQRLNDAI 138


>SB_19865| Best HMM Match : cNMP_binding (HMM E-Value=8.3e-39)
          Length = 373

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +2

Query: 311 RIQVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESII 490
           +  +P  L  +L EF +  + E P D++ +A ++F  L+  +         A +  ES  
Sbjct: 6   QFSIPPGLSSLLEEFVVKCIQENPEDIVEFAADYFNMLKRFKEKKAASKQAAQSKKESED 65

Query: 491 SDE----EEP----QWRALTIGANPFSP 550
            D+    E+P    + R   + A P++P
Sbjct: 66  KDDLAPAEQPIIKGRSRRAAVSAEPYNP 93


>SB_19072| Best HMM Match : RIIa (HMM E-Value=3.5e-07)
          Length = 74

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 317 QVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNRTT 442
           +VP  L ++L  F ++ L E+P DV+ +  +FF      R T
Sbjct: 7   EVPQGLEDLLEAFILTVLKEKPEDVVKFGSQFFASANTKRKT 48


>SB_18296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 515 RALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSLKRS 646
           RA ++    ++P+ +TPK ++  ++ L   PSR    P S +R+
Sbjct: 608 RAWSVSPRLYTPKSITPKFILSPRQTLSAPPSRPKTAPTSAQRT 651


>SB_21541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 518 ALTIGANPFSPRLMTPKRMILTKEPLPCSPSRTHREPVSL 637
           ALT  + PFSP  + P  + LT    P SP++    P SL
Sbjct: 61  ALTAYSRPFSPDSLFPPPLALTAYSRPFSPAKLIARPFSL 100


>SB_36252| Best HMM Match : IQ (HMM E-Value=2.7e-35)
          Length = 442

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 311 RIQVPDDLREILLEFTISYLLEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESII 490
           +++VP   + +L       L EQP D++ +A ++F    + R  T       G   E ++
Sbjct: 9   KLRVPPGFQNLLEGLAREVLREQPDDIVQFAAQYFKNQLSIREETGKDDAKRGENLEKLM 68

Query: 491 SDEE 502
             EE
Sbjct: 69  KGEE 72


>SB_426| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-06)
          Length = 998

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 557  MTPKRMILTKEPLPCSPSRTHRE 625
            MTP R  LT   LPC  SRT+ E
Sbjct: 941  MTPSRASLTPTHLPCRDSRTNSE 963


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 388 RDQLRGRVLH-KVTKQQDDDHRTGSCRRHT 474
           RD L GR+   K+T+++ D   TG C+R T
Sbjct: 299 RDYLEGRLTEWKITEEESDYPSTGFCKRVT 328


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = -1

Query: 633 ETGSLCVRLGEHGRGSFVRIILFGVISLGENGFAPIVKARHCG 505
           +TGSLCV  GE G G    +I      L E     +V  R CG
Sbjct: 643 DTGSLCVVFGESGVGK-TTVIAKAARELQERHSGWVVLFRFCG 684


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,528
Number of Sequences: 59808
Number of extensions: 380976
Number of successful extensions: 803
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)