Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0445
         (681 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13940.1 68414.m01637 expressed protein                             29   2.2  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   2.8  
At5g40590.1 68418.m04926 DC1 domain-containing protein predicted...    28   6.6  
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff...    28   6.6  
At3g14750.1 68416.m01865 expressed protein weak similarity to Se...    28   6.6  
At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Conta...    27   8.7  

>At1g13940.1 68414.m01637 expressed protein
          Length = 1005

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 667 TEQQYAPGPLQRDGLSVRPTWGTRQGLLRQNHPLRGHKSRRKR 539
           +EQ+Y P PL  + L +  T GT   L+    P RG+  + K+
Sbjct: 827 SEQEYMPKPLVPENLKLEETTGT--ALVTSQRPRRGNARKGKQ 867


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 371 LEQPGDVINYAVEFFTRLQNNRTTTIVRGPVAGTPDESIISDEEEPQWRAL 523
           LEQP D ++Y ++F + LQN  + ++ R       DE    + +E + + L
Sbjct: 725 LEQPDDPVSYFMKFLSTLQNIPSVSLFRS--LNEADEKAFKELQETESKLL 773


>At5g40590.1 68418.m04926 DC1 domain-containing protein predicted
           protein, Arabidopsis thaliana
          Length = 234

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 2/20 (10%)
 Frame = -3

Query: 577 NHPLRGHKSRRKR--ICADC 524
           NHPLRGHK   K   IC+ C
Sbjct: 13  NHPLRGHKCEAKDEIICSGC 32


>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
           effector-related contains similarity to SEN1, a positive
           effector of tRNA-splicing endonuclease [Saccharomyces
           cerevisiae] gi|172574|gb|AAB63976
          Length = 692

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
 Frame = -1

Query: 630 TGSLCV-RLGEHGRGSFVRIILFGVI-SLGENGFAPIVKARHCGXXXXXXXXXSGVPATG 457
           T   CV   G HG      II    + S  E      +K R+C           G P TG
Sbjct: 49  TTEQCVCESGAHGSDRVTNIIRSAKLNSSQEAAILSCLKIRNCNHKHSVKLIW-GPPGTG 107

Query: 456 PRTMVVVLLFCNLVKNSTA*LITSP 382
               V  LLFC L+K S   ++ +P
Sbjct: 108 KTKTVATLLFC-LLKLSCKTVVCAP 131


>At3g14750.1 68416.m01865 expressed protein weak similarity to
           Septation ring formation regulator (Swiss-Prot:O34894)
           [Bacillus subtilis]
          Length = 331

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 455 GPVAGTPDESIISDEEEPQWRALTIGANP 541
           GPV   P  S+I D  EPQ+R    G  P
Sbjct: 37  GPVPPPPHPSMIDDSREPQFRVDARGLPP 65


>At1g21780.1 68414.m02726 BTB/POZ domain-containing protein Contains
           similarity to gb|AJ000644 SPOP (speckle-type POZ
           protein) from Homo sapiens and contains a PF|00651
           BTB/POZ domain. ESTs gb|T75841, gb|R89974, gb|R30221,
           gb|N96386, gb|T76457, gb|AI100013 and gb|T76456 come
           from this gene;supported by full-length
          Length = 326

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -2

Query: 296 CSFLKASPHFLDITEWKLSSDA---L*LKLGYHSHRIS*SETPTSKFTM 159
           CSF K+ P  + I  W LS +    L ++L     R+S  + P +KF +
Sbjct: 23  CSFKKSDPFKVGIWNWHLSIERNRYLSVRLFPELSRVSKEQPPVAKFVL 71


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,574,313
Number of Sequences: 28952
Number of extensions: 256787
Number of successful extensions: 624
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)