Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0444
         (720 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   2.5  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   3.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   4.4  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.8  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   7.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.6  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -2

Query: 668 RKLHELHSSLQRNRRVARVPRNKRIAGTRSSSESAGSLHRTLTTPTKPP 522
           R L E+ S +Q+ +    +   ++I   RSS ++ G    + +   +PP
Sbjct: 489 RSLAEMTSHMQQTQHYTNIISQEQIISWRSSDDAKGGGGGSGSGNNQPP 537


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +1

Query: 79  SPSAISVEAGSAASLRCSPPMAAPPPHI 162
           SP+ +S+   ++ S   S P     PH+
Sbjct: 155 SPTPVSINNNTSTSSSASSPSVTAAPHL 182


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +1

Query: 148  PPPHISWLKHGAPLQQDHNVLVSAEGNLLI 237
            PPP I+W   G        +    +G+L I
Sbjct: 1334 PPPVITWKIKGVQFTTSDKIRQQPDGSLFI 1363


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 282 ENIAGKRISEPALLTVYVNGGWSA 353
           EN+A  +   P L  +   GGW+A
Sbjct: 84  ENVANLKSVNPDLKVLISIGGWNA 107


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 282 ENIAGKRISEPALLTVYVNGGWS 350
           E I   + + P+L T+   GGWS
Sbjct: 149 ERIQKLKKANPSLKTLLAIGGWS 171


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 61  KKPFAVSPSAISVEAGSAASLRC 129
           K+P A +P   SV   + + LRC
Sbjct: 47  KRPLAPAPERTSVLVTNNSDLRC 69


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,475
Number of Sequences: 336
Number of extensions: 3848
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)