Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0444
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.2  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   6.2  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    25   8.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   8.2  

>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
 Frame = -1

Query: 243 TRYQQISFCRNQHVVI--LLQRGPVLQPGYVRRW 148
           T Y Q+ + + Q++V   ++Q GP+LQPGYV ++
Sbjct: 390 TPYGQV-YGQPQYIVDPNMVQYGPILQPGYVPQY 422


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +1

Query: 103 AGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVLVS 216
           AG  A+LR   P+  PPP   W K  +    D N  VS
Sbjct: 276 AGLIAALRDGCPVGPPPPERGWEKLVSDDDDDVNDNVS 313


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +1

Query: 34  PAVVELAYLKKPFAVSPSAISVEAGSAASLRCSPPMAAPPP 156
           PA   L Y      VS +AI   A   A++   PP   PPP
Sbjct: 74  PATGRLLYRNVNTQVSHTAIPNPANGYAAVYGGPPSQLPPP 114


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 25  RSQPAVVELAYLKKPFAVSP-SAISVEAGSAASLRCSPPMAAPPP 156
           +++P  +   Y KKP  +SP S+I    G   S    P  A+P P
Sbjct: 235 KAKPMEINNGYRKKPSPLSPNSSIRNREGGNGSYFDGPLTASPTP 279


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 146 AAIGGEQRREAAEPASTEIADGDTANGF 63
           AA GGE    AAE A+ E  + D   GF
Sbjct: 281 AAAGGEAEAPAAEAAAEEEEESDEDMGF 308


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 369 QCRCNGRISSGQRRTRTCTEPHPLNGGAPCQG 464
           QC C   +++ +  +  CT P P  G   C G
Sbjct: 78  QCYCGSTLTATEVSSSLCTTPCPGYGSLMCGG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,563
Number of Sequences: 5004
Number of extensions: 59725
Number of successful extensions: 176
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)