Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0444
(720 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1541 - 27712700-27713026 32 0.40
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 32 0.40
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 31 0.92
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 30 1.6
10_08_0779 - 20497718-20498773 30 1.6
01_06_0822 - 32233395-32233982 30 1.6
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160... 30 2.1
06_01_1173 + 10014391-10014678,10015478-10017245,10017333-100174... 30 2.1
02_01_0171 - 1179095-1179388,1179668-1179801,1180036-1180900,118... 30 2.1
11_01_0606 + 4831102-4833033 29 2.8
08_02_0592 + 19064025-19066596,19067036-19067084,19068530-190686... 29 2.8
01_06_1703 + 39301075-39301829,39302735-39303560 29 2.8
11_01_0612 + 4902197-4902929,4903443-4904071 29 3.7
10_08_0063 + 14588177-14589343 29 3.7
12_02_0297 + 17029850-17030047,17030814-17030973,17031666-170317... 29 4.9
09_03_0042 + 11842263-11842698,11842799-11842896,11843082-118432... 29 4.9
08_01_0477 - 4205562-4206464 29 4.9
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 28 8.6
09_06_0317 - 22265786-22267618,22267874-22268446,22268546-222686... 28 8.6
09_04_0486 + 18012886-18012997,18013098-18013374,18013510-18013516 28 8.6
07_03_1633 - 28281825-28284005 28 8.6
03_02_0753 - 10928744-10929139,10929291-10929509 28 8.6
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 28 8.6
>08_02_1541 - 27712700-27713026
Length = 108
Score = 32.3 bits (70), Expect = 0.40
Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Frame = +3
Query: 396 SGQRRTRTCTEPHPLNGGAPCQGQ--------AVQRTADCLPCQSASLDDGGLGRSGQCA 551
SG+RR +P GG C G +V A + + DDGG G G
Sbjct: 7 SGRRRQIQLQDPTSCGGGGGCDGDDDGGRRIWSVAEIATAVSTGGSGTDDGGGGGGGLRR 66
Query: 552 VQTAGRFRRRSCT 590
AGRF RR T
Sbjct: 67 RIRAGRFYRRLVT 79
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 32.3 bits (70), Expect = 0.40
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -2
Query: 611 PRNKRIAGTRSSSESAGSLHRTLTTPTKPPIVQRGTLTRKAVRGPLHGLTLTRSSSVER 435
P A R +S+ H + TP++P +R +TR+A R L R S+ ER
Sbjct: 408 PVRPSTAERRPTSKQMAQKHVGMATPSRPSTAERRPITREAARKNADVAILHRPSTAER 466
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = -2
Query: 668 RKLHELHSSLQRNRRVARVPRNKRIAGTRSSSESAGSLHRTLTTPTKPPIVQRGTLTRKA 489
R+L +HSS+ PR A R + +H ++ TP +P +R +++
Sbjct: 371 RELAPVHSSIA-------TPRRPSTAERRPITRGMAPMHPSIATPVRPSTAERRPTSKQM 423
Query: 488 VRGPLHGLTLTRSSSVER 435
+ + T +R S+ ER
Sbjct: 424 AQKHVGMATPSRPSTAER 441
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 31.1 bits (67), Expect = 0.92
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 329 LRERRVECLGSLDSVSLQRPNLERAASHED 418
L +RR++CL L + +R ERAA+HED
Sbjct: 579 LPQRRIDCLPFLPTPESRRRRPERAAAHED 608
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +1
Query: 79 SPSAISVEAGSAASLRCSPPMAAPPPHISW 168
SP ++S S+A+ R SPP A PP SW
Sbjct: 159 SPRSMSRTRPSSAASRSSPPFALQPPTPSW 188
>10_08_0779 - 20497718-20498773
Length = 351
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 88 AISVEAGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVLVSAE 222
A++ +A SLR P+ PPPH+ WL G PL +H + A+
Sbjct: 235 ALASVVDAAKSLRS--PLPVPPPHMFWL--GLPLLVNHMLNTDAK 275
>01_06_0822 - 32233395-32233982
Length = 195
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 199 DPAAEGPRASTRICEEVGQPLVESSAEKRLNRPLLKSLTAIPR 71
DP G +A EE GQPLVE + R +P + ++ R
Sbjct: 92 DPTVAGAKAVAPFREEHGQPLVERGGDPRGQQPCVVAIPPAAR 134
>08_01_0193 +
1599970-1600503,1601488-1601919,1602010-1602147,
1602532-1602600
Length = 390
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 103 AGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVLVSA 219
AG+AA+ +PP PPP G+P +++ +SA
Sbjct: 8 AGAAAAAAAAPPPPPPPPPPPLPPRGSPAPSENHTAISA 46
>06_01_1173 +
10014391-10014678,10015478-10017245,10017333-10017436,
10017632-10017706,10017887-10017918,10019396-10019482,
10020848-10021294,10021477-10021630,10022203-10022329,
10022547-10022632,10022719-10022790,10023083-10023286,
10023732-10024049
Length = 1253
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/67 (25%), Positives = 28/67 (41%)
Frame = -2
Query: 668 RKLHELHSSLQRNRRVARVPRNKRIAGTRSSSESAGSLHRTLTTPTKPPIVQRGTLTRKA 489
RKL E R + + R + + G SSS + +R++ +PP V G +
Sbjct: 464 RKLQEKFHGSAHGRTPSTIMRQESLTGKVSSSSNNEKHNRSINMENRPPTVNFGEHRKLQ 523
Query: 488 VRGPLHG 468
+HG
Sbjct: 524 ESASVHG 530
>02_01_0171 -
1179095-1179388,1179668-1179801,1180036-1180900,
1180998-1181258,1181424-1181621,1181752-1181982,
1185337-1185648,1185750-1186247
Length = 930
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 4 WSSRGDIRSQPAVVELAYLKKPFAVSPSAISVEAGSAASLRCSPPMAAP 150
W R Q + EL KP A + + +V AG ++S SPP +AP
Sbjct: 105 WQWRRVRTIQDEINELKKQLKPAAAAATPAAVAAGDSSSSSSSPPPSAP 153
>11_01_0606 + 4831102-4833033
Length = 643
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 308 RYSLPGYVLSNAAVVCHVCKVE 243
R SLPGY LSNA ++ +C ++
Sbjct: 92 RLSLPGYGLSNATILASICLLD 113
>08_02_0592 +
19064025-19066596,19067036-19067084,19068530-19068605,
19068767-19068922
Length = 950
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 399 GQRRTRTCTEPHPLNGGAPCQGQAVQ--RTADCLPCQSASLDDGGLGRSG 542
G R R E +GGA +G V RTAD +P ++A GGL G
Sbjct: 45 GTSRVRGRGEKGTTHGGAEGEGAVVAPVRTADAVPARNAVAVAGGLATRG 94
>01_06_1703 + 39301075-39301829,39302735-39303560
Length = 526
Score = 29.5 bits (63), Expect = 2.8
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Frame = +1
Query: 85 SAISVE---AGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVLVSAEGNLL 234
SA+SV AG+AA RC PP +P I+ + A + H+V V A+ +LL
Sbjct: 176 SALSVAVFLAGTAAYRRCQPPGGSPLTRIAQVVVAA--ARKHDVEVPADASLL 226
>11_01_0612 + 4902197-4902929,4903443-4904071
Length = 453
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Frame = -2
Query: 653 LHSSLQRNRRVAR--VPRNKRIAGTRSSSESAGSLHRTLTTPTKPPIVQRGTLTRKAVRG 480
LH+++ R+ + + NK +AG +S S +LH +P P +L R+ +R
Sbjct: 236 LHAAVLRSAEMTEKILEWNKGLAGEADASSST-ALHFAAASPENNPETDSSSLLRRCLRS 294
Query: 479 P-LHG 468
P HG
Sbjct: 295 PSSHG 299
>10_08_0063 + 14588177-14589343
Length = 388
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Frame = +3
Query: 462 GQAVQRTADCLP-CQSASLDDGG-LGRSGQCAVQTAGRFRRRSCTGDTLVPGHTR 620
G+++ +D + C DDGG LG G Q RF VPGHTR
Sbjct: 69 GRSLHNASDHIAICLVRDDDDGGDLGYGGAAREQMTARFHLLDHHAGKPVPGHTR 123
>12_02_0297 +
17029850-17030047,17030814-17030973,17031666-17031782,
17032145-17032575
Length = 301
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 37 AVVELAYLKKPFAVSPSAISVEAGSAASLRCSPPMAAPPP 156
AVV LA L+ A++ +A S + + L PP+AAP P
Sbjct: 96 AVVLLAMLRSDVALAAAASSNDDTGLSPLMPPPPLAAPVP 135
>09_03_0042 +
11842263-11842698,11842799-11842896,11843082-11843217,
11843349-11843509,11843603-11843753,11843855-11843952,
11844142-11844277,11844404-11844532,11844622-11844720,
11844814-11844909,11845002-11845100,11845201-11845296,
11846394-11846628,11846752-11846873,11846993-11847114,
11847275-11847345,11847940-11848027,11848374-11848439,
11848676-11848795
Length = 852
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = -2
Query: 320 ESGLRYSLPGYVLSNAAVVCHVCKVERDI-SRFPS 219
ESG++Y LP Y++ VC + K + D+ S+ PS
Sbjct: 383 ESGMKYQLPNYLIE----VCEIRKQKNDVESKHPS 413
>08_01_0477 - 4205562-4206464
Length = 300
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 477 RTADCLPCQSASLDDGGLGR 536
RTA L S+SLDDGG GR
Sbjct: 10 RTASSLSSSSSSLDDGGRGR 29
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 27.9 bits (59), Expect = 8.6
Identities = 17/78 (21%), Positives = 30/78 (38%)
Frame = +1
Query: 85 SAISVEAGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVLVSAEGNLLISRSXXXXXX 264
++ + + S SL C+P +AP P + L G+ + + + SA G S
Sbjct: 740 ASANADVTSNNSLSCAPSTSAPSPSVVGLLQGSMNSRQDHPMSSANGPYTSGNSAAIPKV 799
Query: 265 XXXXXXXXXPGREYLSPL 318
P + SP+
Sbjct: 800 NSTTSLQSNPSTSFPSPM 817
>09_06_0317 -
22265786-22267618,22267874-22268446,22268546-22268677,
22268931-22269137,22269287-22269388,22270742-22271032
Length = 1045
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +1
Query: 115 ASLRCSPPM-AAPPPHIS 165
ASLR PP+ + PPPH+S
Sbjct: 709 ASLRAQPPLPSGPPPHVS 726
>09_04_0486 + 18012886-18012997,18013098-18013374,18013510-18013516
Length = 131
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 381 NGRISSGQRRTRTCTEPHPLNGGAPCQGQAV 473
NG + GQ+ TCT P PC GQ+V
Sbjct: 60 NGGAACGQQYVVTCTGPTNQGVPQPCTGQSV 90
>07_03_1633 - 28281825-28284005
Length = 726
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 264 NYSCVAENIA-GKRISEPALLTVYVNGGWSAWGPWT---QCRCNGRISSGQRRTRTCTEP 431
+YSCV + + R++E L + + G S + CR +G G+R R TE
Sbjct: 571 HYSCVVDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEK 630
Query: 432 HPLNGGA 452
P GA
Sbjct: 631 EPTESGA 637
>03_02_0753 - 10928744-10929139,10929291-10929509
Length = 204
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -2
Query: 629 RRVARVPRNKRIAGTR--SSSESAGSLHRTLTTPTKPPIVQR 510
R + V +AGT SSS +G+ HRT+ K P+V +
Sbjct: 133 RELVHVQEENLVAGTLVLSSSGGSGASHRTVVQLVKLPVVDK 174
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Frame = -2
Query: 659 HELHSSLQRNRRVARVPRNKRIAGTRSSSESAGSLHR----------TLTTPTKPPIVQR 510
H++ S +RN+ + +R + S S G HR ++TP +P +R
Sbjct: 286 HKMSGSTERNKLTTKQTGVRRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAER 345
Query: 509 GTLTRKAVRGPLHGLTLTRSSSVERMRFGAG 417
+T + R T R S+ ER G
Sbjct: 346 HPVTTERARKQADVDTPRRPSTSERRAVNKG 376
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,748,368
Number of Sequences: 37544
Number of extensions: 543977
Number of successful extensions: 2399
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2390
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -