Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0444
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              30   0.025
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    28   0.077
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    28   0.077
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   3.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   3.8  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   6.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   6.7  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   6.7  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   6.7  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   8.9  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 29.9 bits (64), Expect = 0.025
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 76  VSPSAISVEAGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVL 210
           + PS  +++ G  A+  C+     P   +SWLK G PL  +  VL
Sbjct: 312 IEPSTQTIDFGRPATFTCNV-RGNPIKTVSWLKDGKPLGLEEAVL 355



 Score = 26.2 bits (55), Expect = 0.31
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 139  MAAPPPHISWLKHGAPLQQDHNVLVSAEGNLLI 237
            +  P P ++W   GA LQ    +    EG+L I
Sbjct: 1301 VGVPAPEVTWKVRGAVLQSSDRLRQLPEGSLFI 1333



 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 91  ISVEAGSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVL 210
           + + AG  A+L+C  P    P +I W   G  +     VL
Sbjct: 593 LPMNAGEFANLQCIVPTGDLPLNIRWSYPGEEMGGSSGVL 632


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 28.3 bits (60), Expect = 0.077
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 DMANYSCVAENIAGKRISEPALLTVY 332
           D   YSC+AEN AGK ++  A L VY
Sbjct: 493 DGGEYSCMAENRAGK-VTHAARLNVY 517



 Score = 27.9 bits (59), Expect = 0.10
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 76  VSPSAISVEAGSAASLRC--SPPMAAPPPHISWLKHGAPL 189
           V+P  +SV  G  A  RC  S    A P  I+W K G  L
Sbjct: 335 VTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQL 374



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +1

Query: 10  SRGDIRSQPAVVELAYLKKPFAVSPSAISVEAGSAASLRCSPPMAAPPPHISWLKHGAPL 189
           S GD     A ++L         S    +++ G A SL+CS     P P ++W   G  L
Sbjct: 404 SEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCS-AAGNPTPQVTWALDGFAL 462

Query: 190 QQDHNVLV 213
             +   ++
Sbjct: 463 PTNGRFMI 470



 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 127 CSPPMAAPPPHISWLKHG 180
           C      PP  ISWLK G
Sbjct: 632 CGVAAGDPPLTISWLKDG 649


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 28.3 bits (60), Expect = 0.077
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 255 DMANYSCVAENIAGKRISEPALLTVY 332
           D   YSC+AEN AGK ++  A L VY
Sbjct: 493 DGGEYSCMAENRAGK-VTHAARLNVY 517



 Score = 27.9 bits (59), Expect = 0.10
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +1

Query: 76  VSPSAISVEAGSAASLRC--SPPMAAPPPHISWLKHGAPL 189
           V+P  +SV  G  A  RC  S    A P  I+W K G  L
Sbjct: 335 VTPPLLSVHLGGNAEFRCEVSTHPQAGPHFITWYKDGRQL 374



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +1

Query: 10  SRGDIRSQPAVVELAYLKKPFAVSPSAISVEAGSAASLRCSPPMAAPPPHISWLKHGAPL 189
           S GD     A ++L         S    +++ G A SL+CS     P P ++W   G  L
Sbjct: 404 SEGDTAQASAELQLGNAPPMLLYSFIEQTLQPGPAVSLKCS-AAGNPTPQVTWALDGFAL 462

Query: 190 QQDHNVLV 213
             +   ++
Sbjct: 463 PTNGRFMI 470



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 264 NYSCVAENIAGKRISEPALLTVYVNGGW 347
           NYSCVA N+A + +S    L V+V   W
Sbjct: 682 NYSCVARNLAAE-VSHTQRLVVHVPPRW 708



 Score = 25.0 bits (52), Expect = 0.72
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 106 GSAASLRCSPPMAAPPPHISWLKHGAPLQQDHNVLVS 216
           G   +L CS      P  ISWLK G  +     V V+
Sbjct: 625 GERTTLTCSVTRGDLPLSISWLKDGRAMGPSERVHVT 661


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -3

Query: 298 FPAMFSATQL*FAMSAKWNEISADFLLQKPARCDPAAEGPRASTRIC 158
           F A F  T +  A+  K N IS  F   K +   P+   PR+   IC
Sbjct: 726 FAAGFCFTVVYAALLTKTNRISRIFNASKHSAKRPSFISPRSQLIIC 772


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 327 VYVNGGWSAWGPWTQCRCN 383
           V VN  W+ W  W + + N
Sbjct: 690 VSVNKSWNKWNDWQETQNN 708


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 327 VYVNGGWSAWGPWTQCRCN 383
           V VN  W+ W  W + + N
Sbjct: 690 VSVNKSWNKWNDWQETQNN 708


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +3

Query: 327 VYVNGGWSAWGPWTQCRCN 383
           V VN  W+ W  W + + N
Sbjct: 690 VSVNKSWNKWNDWQETQNN 708


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 441 NGGAPCQGQAVQRTADCLPCQSASLDDGG 527
           NG    + + VQ  ++CL  +  + DDGG
Sbjct: 49  NGIIDVENEKVQLFSECLIKKFNAYDDGG 77


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 94  SVEAGSAASLRCSPPMAAPPPHI 162
           +V  GSA  +  SP   A PP +
Sbjct: 435 AVNLGSACRIHGSPATTAAPPQL 457


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 621 CACAPEQAYRRYK 583
           CAC P +  RRY+
Sbjct: 406 CACCPGRVRRRYQ 418


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 148 PPPHISWLKHGAPL 189
           P P I+WLK G  L
Sbjct: 50  PRPEITWLKDGIEL 63


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 631 IGVLRVCPGTSVSPVQDLRRN 569
           +G++    G+SVSPV +L  N
Sbjct: 26  VGIMTRKVGSSVSPVVELTEN 46


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 195 GSQRAGFCRRKSADISFHFADMANYSCVAENIAGKRISEPALLTVYVNG 341
           G  +   C+R+       F +  NYSC+  ++   R       TV++ G
Sbjct: 270 GDSKCSLCQRR-------FEEQGNYSCLKVDLIFTRDRAFYFTTVFIPG 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,319
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 33
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)