Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0440
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    27   2.4  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    27   2.4  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.2  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    26   5.5  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   5.5  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   5.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    26   7.3  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   7.3  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    26   7.3  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   7.3  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   9.7  

>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
            subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +3

Query: 399  TSN*KTPTYTSTTRNATITSPPSRLGMNPSTN----TRTKSQYHQ*LEEHIWIQQHRSQQ 566
            T N    T  STT  + ++S    LG  PST      RT  + HQ + +H  + Q  ++ 
Sbjct: 806  TVNRIVSTRASTTNASFMSSVRQNLGRGPSTKDQVINRTLREGHQDVVQHTDLNQSNTK- 864

Query: 567  AIVVRSSCQTGCYQTLGLR 623
               V S+   G  + LG+R
Sbjct: 865  ---VASARPAGSRKRLGVR 880


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 121  FSLPYFRTYASSVLMQISRGTSEIAMNSKFPTNRLILSYQLRQLNQ 258
            F+LP+      + L  IS+  SEI+ N K    +  LS++ R  N+
Sbjct: 915  FNLPFHVKQLYTWLAPISKYDSEISFNQKKERRKTFLSFERRGKNR 960


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = +3

Query: 411 KTPTYTSTTRNATITSPPSRLGMNPSTNTRTKSQYHQ*LEEHIWIQQHRSQQAIVVRSSC 590
           KTP   +T  + T+TSP S    +PS  +  +        E  ++Q+  S+    +R++ 
Sbjct: 572 KTPEKGTTVVSRTVTSPKSGAYASPSKASYNQDSSPNASLEQCFVQRSPSKMLTTLRNNS 631

Query: 591 QT 596
            T
Sbjct: 632 ST 633


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 23/92 (25%), Positives = 41/92 (44%)
 Frame = +1

Query: 502 PNLSIINDLKNTYGFNNIEASKQSLFDLPVRPGAIKHLVFAIGEPCIGRCFLLDAIESAI 681
           PN+ +   +K+ YG  N+E+ K   F      G     V +  +   GR F+ D + ++I
Sbjct: 653 PNVPVNTHVKSYYGHCNVESIKNVNF-----YGQNDEYVMSGSDD--GRFFIWDKLNASI 705

Query: 682 YDVIFKNMGGYDIADHGHTRPQDWRVEEFDSS 777
             +I  +    ++ + GH R     V   DS+
Sbjct: 706 LAIIHGDSEAVNVIE-GHPRCPTLAVSGIDST 736


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 34  TPSPAQTPLKICTKLVIWDEEWQLWP*PAFSLPYFRTYASSVLMQISRGTSEIAMNSKFP 213
           TP+P+Q P++  T L  +D+   +   P+FS       A ++L  +S  TS  AM+   P
Sbjct: 147 TPTPSQLPVRPSTSLSFFDD---IPLGPSFS-------AETILSSLSISTSNNAMSKTTP 196

Query: 214 TNRLI 228
              L+
Sbjct: 197 APPLV 201


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = -3

Query: 253 SVVSTDRIISACLLGTLNS*LSPMSLGLSASVHLTHTFGSTAG 125
           S VST    S+    + +S  S +S  L++S+  T TFGST+G
Sbjct: 727 SSVSTPLSNSSAYPSSGSSTFSRLSSTLTSSIIPTETFGSTSG 769


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 505 NLSIINDLKNTYGFNNIEASKQSLFDLPVRPGA 603
           NL    D   T GFNN+   K  +  LP RP +
Sbjct: 77  NLRKQQDTLPTTGFNNLPEGKAGMQTLPGRPAS 109


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +2

Query: 296 SHLIDSLKSKHITDVKVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTG 475
           ++ ID    KHI D +++   + S+    +LY  D      +  F    R+N IP     
Sbjct: 155 TYAIDENGQKHIVDARMWTEAYMSEVLRSLLYSDD-----TNSRFAGHRRFNPIPNPDAE 209

Query: 476 YESFDKYE 499
              F+  E
Sbjct: 210 LRFFEAAE 217


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +2

Query: 512 VSSMT*RTHMD-STTSKPASNRCSIF--LSDRVLS-NTWSSLLVNRVSDD 649
           +SS T + H     T KP+    +    LSD V S NTWS+ L + V DD
Sbjct: 373 LSSETTKVHRGCENTEKPSEEGKNFTTPLSDSVESENTWSNTLRSSVEDD 422


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 414 TPTYTSTTRNATITSPPSRLGMNPSTNTRTKSQ 512
           TP  T  + NA +  PPS  G N +TN+   +Q
Sbjct: 82  TPKTTPVSLNAGV--PPSNTGANITTNSNNNAQ 112


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 7   CRLSDKRVFTPSPAQTPLKICTKLV 81
           C     R+FT  PAQ P   C K++
Sbjct: 39  CESCVDRIFTTGPAQCPTPGCNKIL 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,524,140
Number of Sequences: 5004
Number of extensions: 77554
Number of successful extensions: 251
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)