Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0440
         (813 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_14261| Best HMM Match : ig (HMM E-Value=0)                          30   2.6  
SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)                    29   5.9  
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)                 28   7.8  

>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 389 YDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYED 502
           YD +   K   VH+DD E Y N+      Y+ +D Y+D
Sbjct: 636 YDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYDD 673


>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 500

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = -1

Query: 660 EQEASSDTRFTNSEDQVFDSTRSDRKIEQRLLAGFDVVESICVLQVIDDTEIWSSYLSKD 481
           + ++  DT+     +  FD T+S+  ++  +LA F  V+     +   D EIW     + 
Sbjct: 130 QHDSGIDTKSFQDMNGSFDDTQSEGSVDSAMLASFTEVQPEAGGKYTTDKEIW-----EI 184

Query: 480 SYPVLMVGMLL*R 442
            +P ++ G L+ R
Sbjct: 185 EFPQILCGRLIGR 197


>SB_28309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 5/124 (4%)
 Frame = +2

Query: 431 DDKERYNNIPTIKTGYESFDKYEDQISVSSMT*RTHMDSTTSKPASNRCSIFLSDRVLSN 610
           DDK  Y+N P+  TG + +  Y+   +V  +T    + ST       +  + L  R   +
Sbjct: 155 DDKPLYHNQPSTSTGEQGYFAYKIFDTVIKLTDNKRVQSTDPSQMQFK-QLLLRLRKSES 213

Query: 611 T---WSSLLVNRVSDDASC--STQSSQPFTM*SSRTWAVTTSLITATPDLKIGGWKNLIQ 775
           T   W+ LL  + S   +   +  SS      SS   +   +LI+ +   K+    NL+ 
Sbjct: 214 TMEDWNVLLTRQPSAPIAVINACHSSALAKKVSSDEMSGLETLISLSKGAKVMLTMNLLP 273

Query: 776 VVGI 787
           +VG+
Sbjct: 274 IVGL 277


>SB_14261| Best HMM Match : ig (HMM E-Value=0)
          Length = 1337

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 787  NPNDL-NQILPP--SNLEV-GCGRDQRCRNRPCS*RSHRKWLTRLRRAGSIV 644
            N N L N+ +PP   N++V G     RCRNRP   R HR +   + RAG +V
Sbjct: 887  NINKLFNETVPPCTGNVKVYGYRGSDRCRNRPYRGRRHRLFAHNM-RAGLLV 937


>SB_56948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 639 YRTMLPARRNRVSHLRC 689
           Y+TM+  +RNR+SH+ C
Sbjct: 141 YKTMISGQRNRISHIAC 157


>SB_18024| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 417 PTYTSTTRNATITSPPSRLGMNPSTNTRT 503
           P    T  N T+TS P+ L  NP+T T T
Sbjct: 332 PATEGTKINTTVTSKPAWLTQNPNTTTTT 360


>SB_49546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1214

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -1

Query: 357 PTRNTLTSVMCLLFRLSI 304
           PTRNT+ S++C+L+ +SI
Sbjct: 912 PTRNTIISIICILWGISI 929


>SB_18540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 414 TPTYTSTTRNATITSPPSRLGMNPSTNTRT 503
           TPT T+TT   T T+ P      P+T T T
Sbjct: 116 TPTATTTTTTTTTTTTPYATTTTPNTTTTT 145



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 TPTYTSTTRNATITSP-PSRLGMNPSTNTRTKSQYHQ 521
           TPT T+TT NAT T+P  +    N +T T T +   Q
Sbjct: 201 TPTATTTTPNATTTTPNTTTTTPNATTTTPTATTMQQ 237


>SB_37854| Best HMM Match : MGC-24 (HMM E-Value=4.9)
          Length = 870

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 557 KPASNRCSIFLSDRVLS-NTWSSLLVNRVSDDASCST 664
           K ASNR    LSD V S NT  SL V ++SD  +CS+
Sbjct: 335 KGASNRN---LSDNVTSGNTCDSLAVRKLSDSKACSS 368


>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 329 CVYSLDCQSNVTRAVPRYPCKSLHWFSC 246
           C Y+  C  N T+     PCK   WF C
Sbjct: 339 CGYTNRCTLNTTQEERDAPCKISSWFKC 366


>SB_15788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1163

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -1

Query: 648  SSDTRFTNSEDQVFDSTRSDRKIEQRLLAGFDVVESICVLQVIDD 514
            + +T    SED VFD   ++  +EQ+     +++  +C + VI D
Sbjct: 969  TGETLSEPSEDSVFDMDDAESPVEQKRKKEKNIIAPVCWMIVIGD 1013


>SB_32170| Best HMM Match : Involucrin2 (HMM E-Value=5)
          Length = 564

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 25/101 (24%), Positives = 39/101 (38%)
 Frame = +2

Query: 341 KVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESFDKYEDQISVSS 520
           ++ L  + S   Y +  D ++  +   +H D+               S   Y D  +VSS
Sbjct: 182 RLHLDDNVSSRTYRLHLDENVSSRTYRLHLDENNSSRTYCLHLDENVSSRTYLDDENVSS 241

Query: 521 MT*RTHMDSTTSKPASNRCSIFLSDRVLSNTWSSLLVNRVS 643
            T R H+D   S   S    + L + V S T+   L   VS
Sbjct: 242 RTYRLHLDENVS---SRTYRLHLDENVSSRTYRLNLDENVS 279


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,044,966
Number of Sequences: 59808
Number of extensions: 591888
Number of successful extensions: 1887
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)