Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0440
         (813 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24610.1 68416.m03091 kelch repeat-containing F-box family pr...    31   1.2  
At2g40360.1 68415.m04977 transducin family protein / WD-40 repea...    29   2.8  
At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff...    29   4.9  
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family...    29   4.9  
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff...    29   4.9  
At4g08740.1 68417.m01442 hypothetical protein                          28   8.5  

>At3g24610.1 68416.m03091 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 445

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 403 EVSVIQDRIWIFGGVSYKEHFDVSNVF 323
           EVSV+  +I ++GG  YK ++D   VF
Sbjct: 201 EVSVVDGKINVWGGCKYKHYYDWGEVF 227


>At2g40360.1 68415.m04977 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to block of proliferation protein Bop1
           (GI:1679772) [Mus musculus]
          Length = 753

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +2

Query: 317 KSKHITDV---KVFLVGHTSKYPYPILYDTDLKLKNAHVHFDDKERYNNIPTIKTGYESF 487
           KSKH+T +   K+ L GH   Y   + Y    + K ++    +++R   IPT  T   S 
Sbjct: 304 KSKHLTYIPPPKLKLPGHDESYNPSLEYIPTEEEKASYELMFEEDRPKFIPTRFTSLRSI 363

Query: 488 DKYEDQISVS 517
             YE+ +  S
Sbjct: 364 PAYENALKES 373


>At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive
            effector-related contains similarity to SEN1, a positive
            effector of tRNA-splicing endonuclease [Saccharomyces
            cerevisiae] gi|172574|gb|AAB63976
          Length = 1311

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 660  EQEASSDTRFTNSEDQVFDSTRSD-RKIEQRLLAGFDVV 547
            E  AS +  F N  + VF +  S  RK+  RL  GFD+V
Sbjct: 903  EARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMV 941


>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
           protein similar to Mrs16p (GI:2737884) [Saccharomyces
           cerevisiae]; weak similarity to ataxin-2 related protein
           (GI:1679686) [Homo sapiens]
          Length = 595

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
 Frame = +2

Query: 413 NAHVHFDDKERYNNI-PTIKTGYESFDKYEDQISVSSMT*RTHMDSTTS---KPASNRCS 580
           N +  FD++ RY+++ P    G   FD  ED   + +    T   S+TS   KPAS+   
Sbjct: 260 NENFDFDEEARYSSVRPVTGFGDSGFD-LEDNALLDTCNDLTFGGSSTSDGQKPASSGKG 318

Query: 581 IFLSDRVLSNTWSSLLVNRVSDDASCSTQSSQPF 682
                RV  ++ SS     V    S S Q S+ F
Sbjct: 319 C-EELRVSGDSQSSRKNKNVDQSCSTSKQQSKDF 351


>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
           effector-related similar to Endonuclease sen1
           (Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
           to tRNA-splicing endonuclease positive effector
           (Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
          Length = 1090

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -1

Query: 660 EQEASSDTRFTNSEDQVFDSTRSD-RKIEQRLLAGFDVV 547
           E  AS +  F N  + VF +  S  RK+  RL  GFD+V
Sbjct: 740 EARASLEASFANEAEIVFTTVSSSGRKLFSRLTHGFDMV 778


>At4g08740.1 68417.m01442 hypothetical protein 
          Length = 213

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/50 (30%), Positives = 33/50 (66%), Gaps = 4/50 (8%)
 Frame = +2

Query: 560 PASNRCSIFLSDRVLSNTWSS----LLVNRVSDDASCSTQSSQPFTM*SS 697
           P+S+   +FL +++LS++W++    + VN++  ++SC+T +   F + SS
Sbjct: 78  PSSSSNQLFLVNKLLSSSWTTSDQLVFVNKLI-NSSCTTSNQLVFILGSS 126


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,569,473
Number of Sequences: 28952
Number of extensions: 408419
Number of successful extensions: 1137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)