Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0439
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    31   0.15 
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   3.3  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    26   5.8  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   7.6  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   7.6  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    25   7.6  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 261  NRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVP 389
            + NG    NN ++  NN++CS EN   + E +  S E ++  P
Sbjct: 1196 DNNGTPSVNNSFTTANNDECSKENSQIEPEGQTASREGVLSTP 1238


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -2

Query: 518 VFKT*FDTSYLSKKKTFNFDNSLWSFIIIFNY 423
           + K   + + LSK+K   +   LWS I+ F Y
Sbjct: 422 ISKRSLEVTKLSKEKLLAYTKKLWSLIVNFEY 453


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 472 LLTLTIRFGPSLSFSITMSSVPYWYSPPGTNTIISLDRCSSSTLSLIFSTEHCS 311
           +++ T R GPS+   ++ S V    +P  TN   S    +SST S   S+ + S
Sbjct: 173 IVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNWNSSSSFTSSTSSTPISSSYSS 226


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 527 SSKVFKT*FDTSYLSKKKTFNFDNSLWSFIIIFNYN 420
           S   + +  +T+Y  K +T  F NS   F+I   YN
Sbjct: 374 SDPTYPSDIETNYFVKGETITFVNSTGIFLIEIEYN 409


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 282 RNNLYSGNNNEQCSVENISDKVEDE 356
           RN   +GN+N + SV+N  D  +D+
Sbjct: 54  RNRAQNGNSNGRASVDNSDDGSKDD 78


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 285  NNL-YSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGG 395
            NN+ Y G N ++ SV  +S + EDE      + ++  G
Sbjct: 903  NNIHYEGENTKKISVHVVSQRCEDEVYEIPNVTIIENG 940


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 659 QHLVPPSSLGNSKILDFSFKGIIQKKCKHKTVSKNIC 549
           +HL+P ++ G SK+  +  KG   +     TV + +C
Sbjct: 107 KHLIPAATTGESKVFYYKMKGDYYRYLAEFTVGE-VC 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,906,486
Number of Sequences: 5004
Number of extensions: 60753
Number of successful extensions: 177
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)