Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0439
         (678 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1151 - 10822616-10823863                                         31   1.1  
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349...    29   4.5  
05_06_0133 + 25905455-25905545,25905650-25906202,25906310-259068...    28   6.0  
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971...    28   6.0  
02_05_0553 - 29918289-29918361,29918505-29918617,29918694-299188...    28   7.9  

>07_01_1151 - 10822616-10823863
          Length = 415

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 439 LSFSITMSSVPY-WYSPPGTNTIISLDRCSSSTLSLIFSTEHCSLLLPEYKLFRSFSPFL 263
           +S+S  +  +PY  ++PP    II L    S  LS I STE+      E+ L +S  P  
Sbjct: 252 VSYSHLLPVMPYNAFNPPPLVCIIQLSLSQSMLLSSIKSTENLKYHAQEFALMKSNPPIA 311

Query: 262 FTLS-HNH 242
              S H H
Sbjct: 312 QRHSLHRH 319


>08_02_1138 +
           24631919-24632248,24634100-24634502,24634788-24634982,
           24635384-24635838,24636119-24636349,24636891-24637123,
           24637899-24637971
          Length = 639

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 397 SPPGTNTIISLDRCSSSTLSLIFSTEHCSLLLPEYKL 287
           SPP T  +I L    SST+S +   E  + ++P Y+L
Sbjct: 269 SPPFTTAMIILASVISSTVSNVLLGEKAAFIVPTYEL 305


>05_06_0133 + 25905455-25905545,25905650-25906202,25906310-25906806,
            25906905-25907043,25907182-25907253,25907344-25907415,
            25907503-25907583,25907899-25908065,25908148-25908416,
            25908512-25908638,25908752-25908820,25908928-25909120,
            25909215-25909707
          Length = 940

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 246  LWLSVNRNGEKDR-NNLYSGNNNEQCSVENI--SDKVEDEQRSNEM 374
            L L   R G +D  NN Y+GNNN+  S  N+  +D+  D  ++N M
Sbjct: 878  LELEDRRCGMEDTYNNFYAGNNNDPNSSYNMYNTDQSTDVSQNNTM 923


>01_06_0160 -
           27095727-27096008,27096164-27096652,27096983-27097132,
           27097656-27097920,27097995-27098274,27100311-27100388,
           27100597-27101240,27101334-27101412,27101489-27101612,
           27101782-27101882,27102870-27103068
          Length = 896

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = -3

Query: 610 FPLKVLFRKSANTKLSPKISASVL*FVTLVKCLKPDLILHTYPKKKLLTLTIRFGPSLSF 431
           F    L      TK +P +  + L  +++ + LKP    +  P + L + +I  GP L  
Sbjct: 610 FDFSPLLSTQLATKYNPPVPTTSLPAISMQETLKPGGFSNAQPTQNLPSASIPSGPPLPQ 669

Query: 430 SITMSSVPYWYSPPG 386
            +++   P    P G
Sbjct: 670 QLSVHPYPQPTLPLG 684


>02_05_0553 -
           29918289-29918361,29918505-29918617,29918694-29918801,
           29918991-29919206,29919284-29919559,29919720-29919824,
           29919925-29920379,29920746-29920940,29921237-29921639,
           29922006-29922518
          Length = 818

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 397 SPPGTNTIISLDRCSSSTLSLIFSTEHCSLLLPEYKL 287
           SPP T  +I L    SST+S +   E  + ++P Y+L
Sbjct: 330 SPPFTTAMIILASVISSTVSNVLLGERPAFIVPAYEL 366


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,053,325
Number of Sequences: 37544
Number of extensions: 328967
Number of successful extensions: 782
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)