Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0439
         (678 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)                36   0.023
SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.070
SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5)                     29   2.6  
SB_51673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   4.6  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.6  
SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)             28   6.0  

>SB_33523| Best HMM Match : DUF323 (HMM E-Value=7.5e-31)
          Length = 611

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +3

Query: 375 MVLVPGGEYQYGTDDIVIENDNEGPKRXXXXXXXXXXXXXXXXXXXKHFTRVTNYKTEAD 554
           MV + GG ++ GT+      D E P R                   + F R   +KTEA+
Sbjct: 1   MVKLSGGIFRMGTNS-EDGKDGENPARDVRVKAFAIDRYPITNELFRAFVRSKKFKTEAE 59

Query: 555 IFGDSFVFALFLNNTFKGKI 614
            FG SF F  F+    + K+
Sbjct: 60  KFGWSFAFHTFVPENVRSKV 79


>SB_51290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = +3

Query: 357 QRSNEMMVLVPGGEYQYGTDDIVIENDNEGPKRXXXXXXXXXXXXXXXXXXXKHFTRVTN 536
           QR+N+M V + GGE+  GT+   I  D EGP R                   + F   T 
Sbjct: 80  QRTNQM-VRIEGGEFTMGTNKPYIVVDGEGPARKVRLRPFYMDIYEVSNREFELFVNATG 138

Query: 537 YKTE 548
           +KTE
Sbjct: 139 HKTE 142


>SB_24207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = -1

Query: 393 HPALIPSFR*TAVHLQLYHLYFQQSIVHCYC-LNINYFGLFLHFYSHSATITSDQRKDN- 220
           HP     F+   V L+   LYF  +I    C +  +Y+ +F    SH A +TS ++  N 
Sbjct: 171 HPGKCSCFQ--TVELKPSMLYFYANISIPICVITFSYYRIFKSVRSHQARVTSMKQNSNT 228

Query: 219 -LCKPN 205
            +C+PN
Sbjct: 229 SICRPN 234


>SB_30231| Best HMM Match : POPLD (HMM E-Value=2.5)
          Length = 181

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/66 (30%), Positives = 23/66 (34%)
 Frame = +3

Query: 249 WLSVNRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGGEYQYGTDDIVI 428
           W  V  NG  D    Y G       V    D   DE  S+  +    GG Y  G     I
Sbjct: 78  WKGVRNNGLGDVFVFYPGEGYRNVRVIRGYDTAADEYPSHLNLFSDEGGTYNSGKQVGYI 137

Query: 429 ENDNEG 446
            ND+ G
Sbjct: 138 RNDDHG 143


>SB_51673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 353

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/66 (30%), Positives = 24/66 (36%)
 Frame = +3

Query: 249 WLSVNRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGGEYQYGTDDIVI 428
           W     +G  D    YSG       V   SD   DE  S+  +    GG Y  G     I
Sbjct: 205 WKGGRNHGLGDVFVFYSGEGYRNVHVIRGSDTAPDEYPSHLDLFSDEGGTYNNGKQVGFI 264

Query: 429 ENDNEG 446
            ND+ G
Sbjct: 265 RNDDHG 270


>SB_46673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 112

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 261 NRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSN 368
           N + E D NN Y+ N+N     EN ++   +E  +N
Sbjct: 42  NSDNENDNNNSYNENDNSNSDNENDNNNSNNENDNN 77


>SB_43870| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 869

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 276 KDRNNLYSGNNNEQCSVENISDKVEDEQRS 365
           KD   LY GN+ E  + +N  D V+D+  S
Sbjct: 407 KDGEKLYYGNSGENDAADNDDDDVDDDDTS 436


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = -2

Query: 641 SSLGNSKILDFSFKGIIQKKCKHKTVSKNICLSLIICNSSKVFKT*FDTSYLSKKKT 471
           S +G +K  +F  K   Q+ C H  V +N C  +++  + K  +  FD    + K+T
Sbjct: 236 SGMGGNKN-NFKDKDACQRACMHSEVERNKCQQMVVIKNYK--RAYFDKKVKNLKET 289


>SB_28576| Best HMM Match : Equine_IAV_S2 (HMM E-Value=2.8)
          Length = 213

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +3

Query: 258 VNRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGGEYQYGTDD 419
           +N N   D NN  + NNN+    +N SD  +D    N ++ ++        +DD
Sbjct: 138 INNNNNNDENNNNNNNNNDD-DDDNNSD--DDNNNINNIINIINNNNNNNNSDD 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,605,498
Number of Sequences: 59808
Number of extensions: 414100
Number of successful extensions: 2447
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)