Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0439
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006630-4|AAK68324.1|  311|Caenorhabditis elegans Hypothetical ...    32   0.33 
AF043704-2|AAX88816.1|  407|Caenorhabditis elegans Prion-like-(q...    31   1.00 
Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z97191-2|CAB10025.1|  481|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   4.0  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   4.0  
L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient ...    28   5.3  
L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient ...    28   5.3  
AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologou...    28   5.3  
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AC136145-1|AAN60521.2|  226|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical ...    27   9.3  
AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical ...    27   9.3  

>AC006630-4|AAK68324.1|  311|Caenorhabditis elegans Hypothetical
           protein F14H12.2 protein.
          Length = 311

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 249 WLSVNRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQ 359
           W+  +    K+ +N+Y+ N+N+ C V +  D V DE+
Sbjct: 242 WIRKHTTNCKESHNVYNDNDNDNCFVNDYFDCVNDEK 278


>AF043704-2|AAX88816.1|  407|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 72
           protein.
          Length = 407

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 337 LIFSTEHCSLLLPEYKLFRSFSPFLFTLSHNHFRPKER 224
           L F  ++ + +LP     R  + F   +SH HFRP++R
Sbjct: 52  LAFQQQNRNFILPSASPLRHRNLFTRQISHRHFRPRQR 89


>Z74034-1|CAA98479.1|  313|Caenorhabditis elegans Hypothetical
           protein F43A11.1 protein.
          Length = 313

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -2

Query: 473 TFNFDNSLWSFIIIFNYNVISSILVFPTRH*YHHFVRPLFI-----FNFITYIFNRAL 315
           TF F  S WS   ++ Y  IS  L++   H    FVR +F+     F FI  IFN  L
Sbjct: 223 TFTFKLSSWSDHRVWTY--ISGTLIWECLHSVDGFVRLIFVFTASKFRFIMVIFNDRL 278


>Z81543-2|CAB04424.1|  309|Caenorhabditis elegans Hypothetical
           protein F49B2.2 protein.
          Length = 309

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -2

Query: 653 LVPPSSLGN----SKILDFSFKGIIQKKCKHKTVSKNICLSLIICNSSKV 516
           L+PP +L N     + +DF F     KKC    VS+NI +S +   S ++
Sbjct: 7   LLPPKALQNVLRNMESMDFVFFSFASKKCLDLAVSQNIKISHLHLTSERI 56


>Z97191-2|CAB10025.1|  481|Caenorhabditis elegans Hypothetical
           protein H32K16.1 protein.
          Length = 481

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
 Frame = -3

Query: 532 VTLVKCLKPDLILHTYPKKKLLTLTIRFGPSLSFS----ITMSSVPY-WYSPPGTNTIIS 368
           V ++    P ++L+     KLLT+   FG  + F+    IT   + + WY      ++  
Sbjct: 199 VMILMYFVPQMLLNFIGHMKLLTILCLFGNVIIFAAIVLITKELMVHTWYPTWELGSVTG 258

Query: 367 LDRCSSSTLSLIFSTEHCSLLLP 299
           ++  S +  +LI+S E  +++LP
Sbjct: 259 IEGISLAAGALIYSFEGQAMVLP 281


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 249   WLSV---NRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGGE 398
             WL +   +RN  KDR+   SG    Q +   I       + +N + +LVPG E
Sbjct: 14977 WLEIANTDRNKFKDRSLTESGEYVYQVTATGIHAVSSPSEETNPVKILVPGSE 15029


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 249   WLSV---NRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGGE 398
             WL +   +RN  KDR+   SG    Q +   I       + +N + +LVPG E
Sbjct: 14977 WLEIANTDRNKFKDRSLTESGEYVYQVTATGIHAVSSPSEETNPVKILVPGSE 15029


>L16685-6|ABD63199.1| 1047|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform b
           protein.
          Length = 1047

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 436 SFSITMSSVPYWYSPPGTNTIISLDRCSSSTLSLIFSTEHCSLLLPEYKLFRSFSPFLFT 257
           SFSI ++ + YWY  P T+  +    C  S  S +FS+   S L   + LF    P    
Sbjct: 589 SFSIGLAQL-YWYYDPNTDVCLPGATCKHS--SNVFSSIADSYLTLLWSLFSITKPEDTD 645

Query: 256 LSHNH 242
           +  NH
Sbjct: 646 VVENH 650


>L16685-5|AAA28167.3| 1027|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 1, isoform a
           protein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 436 SFSITMSSVPYWYSPPGTNTIISLDRCSSSTLSLIFSTEHCSLLLPEYKLFRSFSPFLFT 257
           SFSI ++ + YWY  P T+  +    C  S  S +FS+   S L   + LF    P    
Sbjct: 569 SFSIGLAQL-YWYYDPNTDVCLPGATCKHS--SNVFSSIADSYLTLLWSLFSITKPEDTD 625

Query: 256 LSHNH 242
           +  NH
Sbjct: 626 VVENH 630


>AJ276027-1|CAC81654.1| 1027|Caenorhabditis elegans TRP homologous
           cation channel proteinprotein.
          Length = 1027

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 436 SFSITMSSVPYWYSPPGTNTIISLDRCSSSTLSLIFSTEHCSLLLPEYKLFRSFSPFLFT 257
           SFSI ++ + YWY  P T+  +    C  S  S +FS+   S L   + LF    P    
Sbjct: 569 SFSIGLAQL-YWYYDPNTDVCLPGATCKHS--SNVFSSIADSYLTLLWSLFSITKPEDTD 625

Query: 256 LSHNH 242
           +  NH
Sbjct: 626 VVENH 630


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 267 NGEKDRNNLYSGNNNEQCSVENISDKVEDE 356
           NG+ +R N+ S  N+ +  +E  ++KVE+E
Sbjct: 880 NGDLERMNVVSNGNDIEKEIEKETEKVEEE 909


>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
           protein C32E12.4 protein.
          Length = 1553

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 258 VNRNGEKDRNNL-YSGNNNEQCSVENISDKVEDEQRSNEMMVLVPGGEYQYGTDDIVIEN 434
           V+R   KD +    S   +++  +E+ SD+ EDE+  +E +      EY+Y  ++++ E 
Sbjct: 804 VDRAARKDSDETDESEYYDDEEEIEDESDEYEDEEYWDEEIEYEDEEEYEYEDEEVLEEY 863

Query: 435 DNE 443
            +E
Sbjct: 864 GDE 866


>U41532-2|AAV28353.1|  292|Caenorhabditis elegans Hypothetical
           protein F11D5.7 protein.
          Length = 292

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 503 FDTSYLSKKKTFNFDNSL-WSFIIIFNYNVISSILVFPTR 387
           FDTSY++   T +F  S  ++     N N+I + ++FPT+
Sbjct: 202 FDTSYVTSVYTIDFHKSAGFTVQQALNINLIITTVLFPTK 241


>AC136145-1|AAN60521.2|  226|Caenorhabditis elegans Hypothetical
           protein E_BE45912.2 protein.
          Length = 226

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 524 SKVFKT*FDTSYLSKKKTFNFDNSLWSFIIIFNYNVISSILV 399
           S V KT    S  SK+    FD   W F++I   NV+S +L+
Sbjct: 112 SIVNKTKIKKSKYSKEILSRFDYIKWLFMLIIVLNVLSFVLI 153


>AF125971-5|AAD14765.1|  484|Caenorhabditis elegans Hypothetical
           protein Y4C6B.2a protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = -2

Query: 473 TFNFDNSLWSF-IIIFNYNVISSILVFPT-RH*Y---HHFVRPLFIFNFITYIF 327
           +FNF  +L SF  I+F+Y        FPT +H     HHF R + I   I +IF
Sbjct: 197 SFNFSKTLMSFGTIMFSYG---GHCAFPTIQHDMKKPHHFSRSIIIAFIIIFIF 247


>AC006714-7|AAK29718.3|  612|Caenorhabditis elegans Hypothetical
           protein Y119D3B.11 protein.
          Length = 612

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 352 SSTLSLIFSTEHCSLLLPEYKLFR--SFSPFLFT 257
           +S +SL+FS   C  L+P  KL    S SP  FT
Sbjct: 179 ASLVSLLFSNSTCRRLIPRIKLMTCVSTSPAFFT 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,908,565
Number of Sequences: 27780
Number of extensions: 335449
Number of successful extensions: 1019
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)