Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0439
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.7  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.2  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.2  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 391 VGNTNMELMTL*LKMIMKDQSELSKLKVFFLDKYEVSNQVLN 516
           + +TN ++    ++M +  Q + SKLK+     Y+ +NQ+L+
Sbjct: 66  IKSTNEKITRYIIRMFLISQQKTSKLKI-----YKWNNQILH 102


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +1

Query: 391 VGNTNMELMTL*LKMIMKDQSELSKLKVFFLDKYEVSNQVLN 516
           + +TN ++    ++M +  Q + SKLK+     Y+ +NQ+L+
Sbjct: 49  IKSTNEKITRYIIRMFLISQQKTSKLKI-----YKWNNQILH 85


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -2

Query: 221 ICVSQTRHIDRCIFINSITTRPNLKLGAV*VKGVA 117
           + +  + HI R   + ++  R  LK G + V G+A
Sbjct: 323 VIIDCSNHIGRGKLVTALIQRGTLKKGCLLVSGIA 357


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +3

Query: 255 SVNRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMMVLVPG-GEYQYGTD 416
           + N N   + NN  + NNN   + +N +        +N  M    G G Y +  D
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGLGHYGHHPD 286


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 195 YMPCLAYTNYLSFGRK*LW 251
           Y P + Y+N L F ++ +W
Sbjct: 295 YYPTMTYSNGLPFPQRPIW 313


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 195 YMPCLAYTNYLSFGRK*LW 251
           Y P + Y+N L F ++ +W
Sbjct: 295 YYPTMTYSNGLPFPQRPIW 313


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 427 ITMSSVPYWYSPPGTNTIISLDRCSSSTLSLIFSTEHCSL 308
           + MS V +W  P      ++L   S  TLS   +    SL
Sbjct: 259 VIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHAKSQASL 298


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 605 FKGIIQKKCKHKTV 564
           FK ++QKKC+ + +
Sbjct: 762 FKDLVQKKCEERGI 775


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/32 (21%), Positives = 17/32 (53%)
 Frame = +1

Query: 154 LGLVVIELINMHLSICLVWLTQIIFPLVGSDC 249
           +G++ +   +M   IC +    +++ + GS C
Sbjct: 644 IGVLTLVATSMPTYICYLGKAYLMYAIAGSQC 675


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,942
Number of Sequences: 438
Number of extensions: 4189
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)