Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0439
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49880.1 68418.m06177 mitotic checkpoint family protein simil...    30   1.2  
At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:4...    29   2.1  
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf...    29   2.8  
At5g20490.1 68418.m02435 myosin, putative similar to myosin (GI:...    28   4.9  
At2g28140.1 68415.m03418 expressed protein                             28   4.9  
At5g10510.1 68418.m01217 ovule development protein, putative sim...    28   6.5  
At1g69980.1 68414.m08054 expressed protein                             27   8.6  
At1g12870.1 68414.m01495 S locus F-box-related / SLF-related con...    27   8.6  

>At5g49880.1 68418.m06177 mitotic checkpoint family protein similar
           to mitotic checkpoint protein isoform MAD1a [Homo
           sapiens] GI:4580767; contains Pfam profile PF05557:
           Mitotic checkpoint protein
          Length = 726

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +3

Query: 273 EKDRNNLYSGNNNEQCSVENISDKVEDEQRSNEMM 377
           E+D N L   NN ++  +E +++K+ DE R N+ +
Sbjct: 482 EQDLNQLKDVNNRQRTEIELLNEKLVDEARRNKSL 516


>At1g17580.1 68414.m02165 myosin, putative similar to myosin GI:433663
            from (Arabidopsis thaliana)
          Length = 1520

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = -3

Query: 502  LILHTYPKKKLLTLTIRFGPSLSF-SITMSSVPYWYSPPGTNTI 374
            L++H  PKK L  +T    P LS   +   S  YW    GT+++
Sbjct: 1406 LVIHQKPKKSLKEITTELCPVLSIQQLYRISTMYWDDKYGTHSV 1449


>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 654

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 249 WLSVNRNGEKDRNNLYSGNNNEQCSVENISDKVEDEQRSNE 371
           W+ V   G  +  +  SG++ E C      + VE E+RS E
Sbjct: 49  WMGVEEEGRVETKDSVSGSSVESCFDGGEENSVEAEERSGE 89


>At5g20490.1 68418.m02435 myosin, putative similar to myosin
            (GI:433663) [Arabidopsis thaliana]; myosin-like protein
            my5, common sunflower, PIR:T14279
          Length = 1545

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 502  LILHTYPKKKLLTLTIRFGPSLSF-SITMSSVPYWYSPPGTNTIIS 368
            L++H  PKK L  +T    P LS   +   S  YW    GT+++ S
Sbjct: 1427 LVIHQKPKKTLDEITRELCPVLSIQQLYRISTMYWDDKYGTHSVSS 1472


>At2g28140.1 68415.m03418 expressed protein
          Length = 211

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = -3

Query: 490 TYPKK-KLLTLTIRFGPSLSFSITMSSVPYWYSPP 389
           T P+K KLL   ++ GP L   +    +P W  PP
Sbjct: 129 TLPEKGKLLKAVVKAGPLLQTLLLAGQLPQWRHPP 163


>At5g10510.1 68418.m01217 ovule development protein, putative
           similar to ovule development protein aintegumenta
           (GI:1209099) [Arabidopsis thaliana]
          Length = 566

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 261 NRNGEKDRNNLYSGNNN-EQCSVENISDKVEDEQRSNEMMVLV 386
           N N   D +N Y GNNN E+ +  N +D  + +    + +V V
Sbjct: 191 NTNHRNDNDNHYRGNNNGERINNNNNNDNEKTDSEKEKAVVAV 233


>At1g69980.1 68414.m08054 expressed protein
          Length = 205

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 264 RNGEKDRNNLYSGNNNEQCSVENISD 341
           +NGE++  N  S NN+E+    N+ D
Sbjct: 107 KNGEEETQNDQSNNNDEEAKTRNLLD 132


>At1g12870.1 68414.m01495 S locus F-box-related / SLF-related
           contains F-box domain Pfam:PF00646; contains TIGRFAM
           TIGR01640: F-box protein interaction domain; weakly
           similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 416

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 260 HTQPQSLPTKGKIICVSQTRHIDRCIFINSI 168
           HT+   L  K  +I  S+  HID CI  NS+
Sbjct: 266 HTEIFRLLPKPSLIASSEPSHIDMCIIDNSL 296


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,643,582
Number of Sequences: 28952
Number of extensions: 298327
Number of successful extensions: 908
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)